PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4201-4250 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I6_15 | func_cds | * | 63.7892 | 60.4651 | 67.5000 | 37.5000 | 26 | 17 | 27 | 13 | 10 | 76.9231 | |
| anovak-vg | INDEL | I6_15 | func_cds | het | 56.0784 | 45.8333 | 72.2222 | 40.0000 | 11 | 13 | 13 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | func_cds | homalt | 75.6757 | 93.3333 | 63.6364 | 35.2941 | 14 | 1 | 14 | 8 | 7 | 87.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 38.0769 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | func_cds | het | 99.4220 | 100.0000 | 98.8506 | 43.8710 | 85 | 0 | 86 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 27.4510 | 74 | 0 | 74 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.2963 | 29 | 0 | 29 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | * | 91.6667 | 91.6667 | 91.6667 | 71.4286 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 75.0000 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | func_cds | * | 99.2142 | 99.6568 | 98.7755 | 38.2266 | 4356 | 15 | 4356 | 54 | 5 | 9.2593 | |
| ghariani-varprowl | SNP | tv | func_cds | het | 99.0291 | 99.8118 | 98.2586 | 43.0471 | 2652 | 5 | 2652 | 47 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | func_cds | homalt | 99.7950 | 100.0000 | 99.5909 | 28.7083 | 1704 | 0 | 1704 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | * | func_cds | * | 99.4386 | 99.3258 | 99.5516 | 42.1530 | 442 | 3 | 444 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | func_cds | het | 99.0697 | 99.0654 | 99.0741 | 46.6667 | 212 | 2 | 214 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 36.1582 | 226 | 0 | 226 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | * | func_cds | * | 99.4386 | 99.3258 | 99.5516 | 44.3196 | 442 | 3 | 444 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | func_cds | het | 99.0697 | 99.0654 | 99.0741 | 49.1765 | 212 | 2 | 214 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 37.9121 | 226 | 0 | 226 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | func_cds | * | 99.9314 | 99.9542 | 99.9085 | 27.9499 | 4369 | 2 | 4368 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | func_cds | het | 99.8871 | 99.9247 | 99.8495 | 28.9115 | 2655 | 2 | 2654 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.9630 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.9774 | 1704 | 0 | 1704 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 73.8095 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 59.0909 | 9 | 0 | 9 | 0 | 0 | ||