PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42301-42350 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 66.3215 | 73.5347 | 60.3969 | 44.0745 | 1217 | 438 | 1978 | 1297 | 975 | 75.1735 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 47.3773 | 0.0000 | 0.0000 | 560 | 622 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 20.0923 | 11.4118 | 83.9506 | 41.7266 | 97 | 753 | 68 | 13 | 13 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 28.0220 | 59.5556 | 0 | 388 | 51 | 131 | 41 | 31.2977 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 27.3743 | 59.8655 | 0 | 168 | 49 | 130 | 40 | 30.7692 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 175 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 25.0000 | 0 | 45 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 69.6175 | 73.0888 | 66.4609 | 58.6501 | 2849 | 1049 | 4092 | 2065 | 1377 | 66.6828 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 74.2485 | 93.1298 | 61.7328 | 60.2144 | 1586 | 117 | 3299 | 2045 | 1364 | 66.6993 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 55.8407 | 0.0000 | 0.0000 | 631 | 499 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.7913 | 59.3427 | 97.5400 | 44.2387 | 632 | 433 | 793 | 20 | 13 | 65.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 41.1383 | 38.1818 | 44.5910 | 44.9927 | 504 | 816 | 845 | 1050 | 781 | 74.3810 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 52.7742 | 65.9483 | 43.9872 | 44.8571 | 306 | 158 | 823 | 1048 | 780 | 74.4275 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 28.7500 | 0.0000 | 0.0000 | 184 | 456 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 12.1069 | 6.4815 | 91.6667 | 53.8462 | 14 | 202 | 22 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.3186 | 75.9474 | 67.2215 | 47.6957 | 9018 | 2856 | 12237 | 5967 | 4608 | 77.2247 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.5644 | 95.3537 | 63.9609 | 48.2339 | 6403 | 312 | 10480 | 5905 | 4553 | 77.1041 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 62.1567 | 0.0000 | 0.0000 | 928 | 565 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 62.3368 | 46.0175 | 96.5915 | 42.2906 | 1687 | 1979 | 1757 | 62 | 55 | 88.7097 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 38.6341 | 100.0000 | 23.9420 | 83.0324 | 1 | 0 | 198 | 629 | 44 | 6.9952 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 35.0259 | 100.0000 | 21.2312 | 82.4631 | 1 | 0 | 169 | 627 | 43 | 6.8581 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 93.5484 | 90.7463 | 0 | 0 | 29 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 4.6119 | 2.5026 | 29.3478 | 74.2297 | 24 | 935 | 27 | 65 | 39 | 60.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 5.8388 | 3.2419 | 29.3478 | 73.4870 | 13 | 388 | 27 | 65 | 39 | 60.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 3.3537 | 0.0000 | 0.0000 | 11 | 317 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 230 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2098 | 85.2583 | 89.2527 | 52.9223 | 16934 | 2928 | 27995 | 3371 | 3181 | 94.3637 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.4986 | 91.8437 | 95.2143 | 47.2808 | 10202 | 906 | 16374 | 823 | 701 | 85.1762 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 55.8931 | 39.9329 | 93.1051 | 68.6867 | 1071 | 1611 | 1958 | 145 | 138 | 95.1724 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 86.1593 | 93.2312 | 80.0845 | 46.3972 | 5661 | 411 | 9663 | 2403 | 2342 | 97.4615 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.4420 | 91.1431 | 95.8599 | 59.1279 | 1204 | 117 | 1204 | 52 | 39 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 94.2276 | 93.3190 | 95.1542 | 68.0956 | 433 | 31 | 432 | 22 | 16 | 72.7273 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 93.5311 | 89.0796 | 98.4509 | 45.0331 | 571 | 70 | 572 | 9 | 8 | 88.8889 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.5332 | 92.5926 | 90.4977 | 62.7319 | 200 | 16 | 200 | 21 | 15 | 71.4286 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4954 | 99.2083 | 99.7842 | 37.6168 | 7393 | 59 | 7397 | 16 | 10 | 62.5000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4116 | 99.0616 | 99.7639 | 37.2813 | 4645 | 44 | 4649 | 11 | 5 | 45.4545 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6549 | 99.4561 | 99.8544 | 38.0748 | 2743 | 15 | 2743 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3832 | 99.0868 | 99.6813 | 36.6712 | 10634 | 98 | 10635 | 34 | 19 | 55.8824 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2558 | 98.8879 | 99.6265 | 37.2904 | 6669 | 75 | 6668 | 25 | 12 | 48.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6106 | 99.4231 | 99.7987 | 35.5602 | 3964 | 23 | 3966 | 8 | 6 | 75.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4319 | 99.1366 | 99.7290 | 37.0539 | 18026 | 157 | 18031 | 49 | 28 | 57.1429 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3197 | 98.9592 | 99.6829 | 37.2866 | 11314 | 119 | 11317 | 36 | 17 | 47.2222 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6287 | 99.4366 | 99.8215 | 36.6123 | 6707 | 38 | 6709 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 70.0000 | 92.5373 | 0 | 0 | 7 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 93.3333 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 95.3488 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |