PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42151-42200 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.5922 | 0.0000 | 0.0000 | 7 | 1175 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.3046 | 38.5882 | 91.6201 | 62.7471 | 328 | 522 | 328 | 30 | 21 | 70.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 55.0492 | 45.3608 | 70.0000 | 75.3208 | 176 | 212 | 175 | 75 | 71 | 94.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.1553 | 85.1190 | 68.8995 | 75.1486 | 143 | 25 | 144 | 65 | 61 | 93.8462 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.7473 | 99.3571 | 94.2711 | 57.1736 | 10663 | 69 | 10696 | 650 | 69 | 10.6154 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.6807 | 99.1251 | 92.4676 | 62.1593 | 6685 | 59 | 6715 | 547 | 8 | 1.4625 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.6127 | 99.7743 | 97.4780 | 44.0701 | 3978 | 9 | 3981 | 103 | 61 | 59.2233 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.1429 | 0.0000 | 0.0000 | 2 | 173 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.0930 | 68.8889 | 75.6098 | 76.1628 | 31 | 14 | 31 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.7782 | 64.6063 | 83.3167 | 68.8822 | 2519 | 1380 | 2512 | 503 | 427 | 84.8907 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.9441 | 95.3611 | 79.8924 | 72.5785 | 1624 | 79 | 1633 | 411 | 364 | 88.5645 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.5915 | 0.0000 | 0.0000 | 18 | 1113 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 86.2429 | 82.3474 | 90.5252 | 56.5548 | 877 | 188 | 879 | 92 | 63 | 68.4783 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 52.6126 | 49.5308 | 56.1033 | 72.8835 | 475 | 484 | 478 | 374 | 353 | 94.3850 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 66.8212 | 95.0125 | 51.5313 | 71.7775 | 381 | 20 | 387 | 364 | 344 | 94.5055 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.3049 | 0.0000 | 0.0000 | 1 | 327 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 55.8190 | 40.4348 | 90.0990 | 79.0021 | 93 | 137 | 91 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.5798 | 99.2191 | 94.0773 | 54.5022 | 18041 | 142 | 18092 | 1139 | 144 | 12.6427 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.5503 | 98.9154 | 92.4066 | 58.6255 | 11309 | 124 | 11354 | 933 | 13 | 1.3934 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4008 | 99.8073 | 97.0334 | 44.7618 | 6732 | 13 | 6738 | 206 | 131 | 63.5922 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2458 | 98.7161 | 99.7811 | 57.1497 | 19607 | 255 | 19600 | 43 | 25 | 58.1395 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0203 | 98.2985 | 99.7527 | 60.4577 | 10919 | 189 | 10893 | 27 | 9 | 33.3333 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0211 | 98.0611 | 100.0000 | 42.7615 | 2630 | 52 | 2649 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7530 | 99.7694 | 99.7366 | 55.3284 | 6058 | 14 | 6058 | 16 | 16 | 100.0000 | |
| hfeng-pmm1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6301 | 97.6017 | 99.6805 | 67.8645 | 936 | 23 | 936 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0909 | 96.7581 | 99.4609 | 78.0343 | 388 | 13 | 369 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7654 | 97.5610 | 100.0000 | 38.0256 | 320 | 8 | 339 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3464 | 99.1304 | 99.5633 | 66.6181 | 228 | 2 | 228 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4714 | 99.0316 | 99.9151 | 48.2190 | 11760 | 115 | 11765 | 10 | 7 | 70.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2959 | 98.6897 | 99.9096 | 50.3888 | 6628 | 88 | 6630 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.2238 | 98.4595 | 100.0000 | 33.1973 | 1470 | 23 | 1473 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8909 | 99.8909 | 99.8909 | 48.7917 | 3662 | 4 | 3662 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.3323 | 99.0070 | 93.7984 | 50.0158 | 7378 | 74 | 7396 | 489 | 75 | 15.3374 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.3623 | 98.6138 | 92.3184 | 52.1702 | 4624 | 65 | 4639 | 386 | 5 | 1.2953 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.0963 | 99.8550 | 96.3986 | 45.7203 | 2754 | 4 | 2757 | 103 | 70 | 67.9612 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9744 | 98.1557 | 99.8069 | 48.5309 | 3619 | 68 | 3619 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3163 | 97.0393 | 99.6273 | 57.4974 | 1606 | 49 | 1604 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.3614 | 98.7310 | 100.0000 | 27.9729 | 1167 | 15 | 1169 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7054 | 99.5294 | 99.8819 | 48.1640 | 846 | 4 | 846 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||