PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42001-42050 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7204 | 98.1014 | 99.3473 | 45.8867 | 3617 | 70 | 3653 | 24 | 22 | 91.6667 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6497 | 97.9456 | 99.3640 | 46.2896 | 1621 | 34 | 2812 | 18 | 16 | 88.8889 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 97.2927 | 0.0000 | 0.0000 | 1150 | 32 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4104 | 99.5294 | 99.2916 | 44.4954 | 846 | 4 | 841 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2036 | 97.1649 | 99.2647 | 76.2791 | 377 | 11 | 405 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4748 | 95.8333 | 99.1736 | 75.2556 | 161 | 7 | 360 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 97.7143 | 0.0000 | 0.0000 | 171 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2134 | 45 | 0 | 45 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4541 | 99.1074 | 99.8032 | 43.2339 | 11769 | 106 | 11664 | 23 | 18 | 78.2609 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4403 | 99.1066 | 99.7762 | 43.0060 | 6656 | 60 | 8025 | 18 | 13 | 72.2222 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 97.6557 | 0.0000 | 0.0000 | 1458 | 35 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7813 | 99.6999 | 99.8628 | 43.7307 | 3655 | 11 | 3639 | 5 | 5 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2844 | 97.5309 | 78.9862 | 44.6999 | 7268 | 184 | 7277 | 1936 | 72 | 3.7190 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.5695 | 96.6091 | 72.0927 | 44.6474 | 4530 | 159 | 4544 | 1759 | 24 | 1.3644 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 61.5385 | 80.0000 | 50.0000 | 50.0000 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.5171 | 99.1298 | 94.0386 | 44.7974 | 2734 | 24 | 2729 | 173 | 47 | 27.1676 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4504 | 99.3304 | 99.5707 | 59.9377 | 19729 | 133 | 19713 | 85 | 64 | 75.2941 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5579 | 99.4508 | 99.6651 | 63.3945 | 11047 | 61 | 11012 | 37 | 16 | 43.2432 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7395 | 97.7629 | 99.7358 | 42.4788 | 2622 | 60 | 2643 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5645 | 99.8024 | 99.3278 | 58.3031 | 6060 | 12 | 6058 | 41 | 41 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 88.4231 | 97.9687 | 80.5725 | 52.0129 | 10514 | 218 | 10584 | 2552 | 124 | 4.8589 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.0742 | 97.1085 | 74.1248 | 53.6075 | 6549 | 195 | 6606 | 2306 | 39 | 1.6912 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 50.0000 | 1 | 0 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.7631 | 99.4231 | 94.2417 | 48.2590 | 3964 | 23 | 3977 | 243 | 84 | 34.5679 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 60.2687 | 57.5149 | 63.2995 | 49.8576 | 2120 | 1566 | 2118 | 1228 | 856 | 69.7068 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.2936 | 79.9879 | 72.9255 | 50.4089 | 1323 | 331 | 1371 | 509 | 198 | 38.8998 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 3.7225 | 0.0000 | 0.0000 | 44 | 1138 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 64.6970 | 88.5882 | 50.9550 | 49.1325 | 753 | 97 | 747 | 719 | 658 | 91.5160 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 26.6407 | 17.5625 | 55.1471 | 66.3088 | 232 | 1089 | 225 | 183 | 170 | 92.8962 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 38.9082 | 26.7241 | 71.5116 | 73.2919 | 124 | 340 | 123 | 49 | 41 | 83.6735 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.7800 | 0.0000 | 0.0000 | 5 | 636 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 45.3431 | 47.6852 | 43.2203 | 58.3774 | 103 | 113 | 102 | 134 | 129 | 96.2687 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.9780 | 97.7891 | 79.9560 | 49.1916 | 17781 | 402 | 17815 | 4466 | 191 | 4.2768 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 83.4518 | 96.9037 | 73.2793 | 50.2099 | 11079 | 354 | 11126 | 4057 | 61 | 1.5036 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 61.5385 | 80.0000 | 50.0000 | 50.0000 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.7305 | 99.3032 | 94.2877 | 46.8635 | 6698 | 47 | 6685 | 405 | 129 | 31.8519 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 17.8423 | 11.0825 | 45.7447 | 82.7206 | 43 | 345 | 43 | 51 | 42 | 82.3529 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 25.2427 | 15.4762 | 68.4211 | 87.0748 | 26 | 142 | 26 | 12 | 8 | 66.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 175 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 33.6634 | 37.7778 | 30.3571 | 77.6000 | 17 | 28 | 17 | 39 | 34 | 87.1795 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 68.7950 | 62.4006 | 76.6496 | 65.6998 | 2433 | 1466 | 2393 | 729 | 415 | 56.9273 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.0114 | 86.8467 | 75.9109 | 68.6846 | 1479 | 224 | 1500 | 476 | 205 | 43.0672 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 4.3324 | 0.0000 | 0.0000 | 49 | 1082 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 81.2972 | 84.9765 | 77.9232 | 58.9542 | 905 | 160 | 893 | 253 | 210 | 83.0040 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3532 | 98.9691 | 99.7403 | 76.7652 | 384 | 4 | 384 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4012 | 98.8095 | 100.0000 | 80.3121 | 166 | 2 | 164 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.4253 | 98.8571 | 100.0000 | 67.2285 | 173 | 2 | 175 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 84.1379 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1772 | 98.9228 | 99.4328 | 67.8997 | 3857 | 42 | 3857 | 22 | 16 | 72.7273 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4408 | 99.3541 | 99.5277 | 74.9889 | 1692 | 11 | 1686 | 8 | 2 | 25.0000 | |