PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39151-39200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 83.7927 | 80.8511 | 86.9565 | 77.0000 | 38 | 9 | 40 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.4286 | 100.0000 | 84.2105 | 82.0755 | 15 | 0 | 16 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.8511 | 67.8571 | 100.0000 | 58.3333 | 19 | 9 | 20 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.7273 | 100.0000 | 57.1429 | 84.7826 | 4 | 0 | 4 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5852 | 99.4085 | 99.7626 | 54.0647 | 25209 | 150 | 25209 | 60 | 50 | 83.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5687 | 99.2552 | 99.8842 | 53.3003 | 14660 | 110 | 14664 | 17 | 12 | 70.5882 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.4104 | 94.8905 | 97.9798 | 71.8750 | 390 | 21 | 388 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7349 | 99.8133 | 99.6566 | 54.0176 | 10159 | 19 | 10157 | 35 | 30 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.9356 | 91.3534 | 94.5736 | 81.3987 | 243 | 23 | 244 | 14 | 11 | 78.5714 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.5453 | 96.1290 | 94.9686 | 82.4503 | 149 | 6 | 151 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 69.8835 | 56.7568 | 90.9091 | 61.4035 | 21 | 16 | 20 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.6887 | 98.6486 | 94.8052 | 81.8396 | 73 | 1 | 73 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3740 | 94.1935 | 98.6577 | 81.6728 | 146 | 9 | 147 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.8812 | 93.5484 | 98.3333 | 84.2520 | 58 | 4 | 59 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.2381 | 90.9091 | 100.0000 | 74.1722 | 40 | 4 | 39 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 82.2064 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 66.6667 | 95.7746 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 100.0000 | 95.6522 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 41.7808 | 0 | 0 | 0 | 85 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 32.9412 | 0 | 0 | 0 | 57 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 54.0984 | 0 | 0 | 0 | 28 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.7368 | 100.0000 | 90.0000 | 98.2254 | 1 | 0 | 18 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 100.0000 | 86.6667 | 98.1527 | 1 | 0 | 13 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.1429 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.5714 | 0 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8164 | 99.7288 | 99.9041 | 43.6419 | 6251 | 17 | 6252 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8276 | 99.7048 | 99.9507 | 44.3071 | 4053 | 12 | 4053 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7955 | 99.7728 | 99.8183 | 42.2613 | 2196 | 5 | 2197 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4978 | 99.2429 | 99.7541 | 54.5635 | 25167 | 192 | 25148 | 62 | 34 | 54.8387 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4030 | 99.1198 | 99.6877 | 55.5385 | 14640 | 130 | 15005 | 47 | 23 | 48.9362 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3783 | 94.8905 | 100.0000 | 85.0000 | 390 | 21 | 51 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7242 | 99.5972 | 99.8516 | 52.5270 | 10137 | 41 | 10092 | 15 | 11 | 73.3333 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 38.1346 | 97.7011 | 23.6908 | 69.1538 | 85 | 2 | 95 | 306 | 2 | 0.6536 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 37.1972 | 98.0769 | 22.9508 | 63.1197 | 51 | 1 | 70 | 235 | 2 | 0.8511 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 11 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 41.3223 | 100.0000 | 26.0417 | 79.7040 | 23 | 0 | 25 | 71 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7292 | 99.5876 | 99.8713 | 60.0265 | 10866 | 45 | 10866 | 14 | 10 | 71.4286 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7217 | 99.5441 | 99.8999 | 60.0411 | 6987 | 32 | 6987 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7425 | 99.6656 | 99.8196 | 59.9732 | 3874 | 13 | 3874 | 7 | 6 | 85.7143 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9022 | 99.1118 | 98.6934 | 54.7879 | 28009 | 251 | 51137 | 677 | 94 | 13.8848 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7947 | 99.0383 | 98.5524 | 55.6705 | 16271 | 158 | 31384 | 461 | 49 | 10.6291 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8196 | 92.1495 | 99.7942 | 70.9504 | 493 | 42 | 485 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2214 | 99.5485 | 98.8965 | 52.5869 | 11245 | 51 | 19268 | 215 | 45 | 20.9302 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.9005 | 93.9873 | 100.0000 | 71.9133 | 297 | 19 | 298 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8453 | 100.0000 | 99.6910 | 63.9569 | 968 | 0 | 968 | 3 | 3 | 100.0000 | |