PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39051-39100 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8486 | 98.4572 | 99.2431 | 55.7060 | 16912 | 265 | 16914 | 129 | 121 | 93.7984 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9381 | 97.9340 | 99.9631 | 55.1737 | 10855 | 229 | 10848 | 4 | 0 | 0.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6888 | 99.4087 | 97.9793 | 56.5956 | 6052 | 36 | 6061 | 125 | 121 | 96.8000 | |
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9427 | 98.5704 | 99.3179 | 69.3175 | 2620 | 38 | 2621 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9799 | 98.8355 | 99.1247 | 71.3838 | 1358 | 16 | 1359 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.9305 | 94.9367 | 99.0099 | 74.3003 | 300 | 16 | 300 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5344 | 99.3802 | 99.6891 | 63.3219 | 962 | 6 | 962 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0099 | 100.0000 | 98.0392 | 81.6547 | 52 | 0 | 50 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 46.1538 | 12 | 0 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 80.3419 | 23 | 0 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8087 | 99.7595 | 99.8579 | 55.0764 | 25298 | 61 | 25300 | 36 | 29 | 80.5556 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7968 | 99.7563 | 99.8374 | 54.8306 | 14734 | 36 | 14736 | 24 | 17 | 70.8333 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.4054 | 95.8637 | 98.9975 | 72.4828 | 394 | 17 | 395 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9214 | 99.9214 | 99.9214 | 54.3038 | 10170 | 8 | 10169 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3740 | 94.1935 | 98.6577 | 81.7625 | 146 | 9 | 147 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.5740 | 96.7742 | 98.3871 | 84.9148 | 60 | 2 | 61 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 91.5663 | 86.3636 | 97.4359 | 74.3421 | 38 | 6 | 38 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 81.1024 | 48 | 1 | 48 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9282 | 99.9043 | 99.9521 | 44.5722 | 6262 | 6 | 6262 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9262 | 99.9262 | 99.9262 | 45.5021 | 4062 | 3 | 4062 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.8637 | 100.0000 | 42.6858 | 2198 | 3 | 2198 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9221 | 99.8717 | 99.9725 | 60.1200 | 10897 | 14 | 10893 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9002 | 99.8433 | 99.9572 | 60.4236 | 7008 | 11 | 7004 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9614 | 99.9228 | 100.0000 | 59.5375 | 3884 | 3 | 3884 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.1595 | 87.2340 | 97.6744 | 75.0000 | 41 | 6 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 86.6667 | 100.0000 | 84.7059 | 13 | 2 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.3077 | 85.7143 | 100.0000 | 53.7037 | 24 | 4 | 25 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 84.8485 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4286 | 100.0000 | 98.8636 | 79.0974 | 87 | 0 | 87 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8679 | 98.4962 | 99.2424 | 81.2899 | 262 | 4 | 262 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3548 | 99.3548 | 99.3548 | 83.2432 | 154 | 1 | 154 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.4444 | 91.8919 | 97.1429 | 58.3333 | 34 | 3 | 34 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5920 | 74 | 0 | 74 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9243 | 99.8836 | 99.9650 | 55.5651 | 17157 | 20 | 17153 | 6 | 5 | 83.3333 | |