PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38501-38550 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.8863 | 96.6892 | 99.1133 | 68.8334 | 2570 | 88 | 2571 | 23 | 22 | 95.6522 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.1652 | 97.0888 | 99.2658 | 70.8788 | 1334 | 40 | 1352 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.0050 | 89.8734 | 98.5348 | 73.8506 | 284 | 32 | 269 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7030 | 98.3471 | 99.0615 | 63.1437 | 952 | 16 | 950 | 9 | 8 | 88.8889 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5573 | 99.3217 | 99.7940 | 54.6839 | 25187 | 172 | 25185 | 52 | 39 | 75.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5418 | 99.2552 | 99.8299 | 54.5384 | 14660 | 110 | 14675 | 25 | 12 | 48.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2259 | 93.4307 | 99.1935 | 71.5379 | 384 | 27 | 369 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7100 | 99.6561 | 99.7639 | 53.8981 | 10143 | 35 | 10141 | 24 | 24 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 57.2597 | 42.5532 | 87.5000 | 68.4211 | 20 | 27 | 21 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 57.1429 | 40.0000 | 100.0000 | 64.5161 | 6 | 9 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 54.2254 | 39.2857 | 87.5000 | 57.8947 | 11 | 17 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 66.6667 | 75.0000 | 60.0000 | 80.7692 | 3 | 1 | 3 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6944 | 99.7089 | 99.6800 | 57.2704 | 17127 | 50 | 17130 | 55 | 30 | 54.5455 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6891 | 99.7744 | 99.6038 | 58.0494 | 11059 | 25 | 11062 | 44 | 20 | 45.4545 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.2609 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7040 | 99.5894 | 99.8189 | 55.7321 | 6063 | 25 | 6063 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7130 | 99.7766 | 99.6495 | 46.4322 | 6254 | 14 | 6254 | 22 | 9 | 40.9091 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7052 | 99.8278 | 99.5828 | 48.0230 | 4058 | 7 | 4058 | 17 | 5 | 29.4118 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7273 | 99.6820 | 99.7726 | 43.0753 | 2194 | 7 | 2194 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8166 | 94.3609 | 97.3180 | 80.3612 | 251 | 15 | 254 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.8400 | 95.4839 | 98.2353 | 80.5714 | 148 | 7 | 167 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.9519 | 83.7838 | 88.2353 | 61.3636 | 31 | 6 | 15 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2973 | 97.2973 | 97.2973 | 81.9512 | 72 | 2 | 72 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 86.4681 | 80.0000 | 94.0741 | 79.8206 | 124 | 31 | 127 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.0010 | 80.6452 | 94.4444 | 79.8319 | 50 | 12 | 68 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 75.3363 | 63.6364 | 92.3077 | 82.1918 | 28 | 16 | 12 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.9387 | 93.8776 | 94.0000 | 79.0795 | 46 | 3 | 47 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7221 | 99.9521 | 99.4931 | 42.7028 | 6265 | 3 | 6281 | 32 | 9 | 28.1250 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7046 | 99.9754 | 99.4352 | 43.5229 | 4064 | 1 | 4049 | 23 | 5 | 21.7391 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.4127 | 100.0000 | 96.8750 | 65.5914 | 2 | 0 | 31 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7733 | 99.9091 | 99.6378 | 40.5384 | 2199 | 2 | 2201 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7522 | 99.8777 | 99.6270 | 52.6879 | 17156 | 21 | 16826 | 63 | 23 | 36.5079 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7381 | 99.9188 | 99.5581 | 52.7387 | 11075 | 9 | 10815 | 48 | 16 | 33.3333 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.2701 | 100.0000 | 98.5507 | 78.2334 | 5 | 0 | 68 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7839 | 99.8029 | 99.7650 | 51.9403 | 6076 | 12 | 5943 | 14 | 7 | 50.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2808 | 98.8889 | 99.6759 | 57.1851 | 27946 | 314 | 27984 | 91 | 76 | 83.5165 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2884 | 98.8435 | 99.7372 | 57.4242 | 16239 | 190 | 16321 | 43 | 29 | 67.4419 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.8240 | 87.8505 | 98.3945 | 74.4282 | 470 | 65 | 429 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5570 | 99.4777 | 99.6364 | 55.6678 | 11237 | 59 | 11234 | 41 | 40 | 97.5610 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.3576 | 79.3103 | 97.2222 | 72.2008 | 69 | 18 | 70 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 86.1595 | 76.9231 | 97.9167 | 68.0000 | 40 | 12 | 47 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 71.4286 | 8 | 4 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.3333 | 91.3043 | 95.4545 | 78.4314 | 21 | 2 | 21 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7641 | 99.8350 | 99.6932 | 57.1024 | 10893 | 18 | 10724 | 33 | 14 | 42.4242 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7540 | 99.8860 | 99.6224 | 56.8960 | 7011 | 8 | 6859 | 26 | 11 | 42.3077 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.1150 | 100.0000 | 98.2456 | 80.1394 | 5 | 0 | 56 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7927 | 99.7427 | 99.8427 | 56.7264 | 3877 | 10 | 3809 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||