PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37051-37100 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 872 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 6.0241 | 3.1056 | 100.0000 | 68.7500 | 5 | 156 | 5 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 25.0000 | 0.0000 | 95.8333 | 1 | 3 | 0 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 95.6522 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 5.6604 | 2.9126 | 100.0000 | 95.4545 | 6 | 200 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 95.3488 | 6 | 21 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 179 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 4.3478 | 0.0000 | 96.8254 | 4 | 88 | 0 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 44.4444 | 0.0000 | 96.6667 | 4 | 5 | 0 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 83 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 68.3544 | 64.2857 | 72.9730 | 97.1820 | 27 | 15 | 27 | 10 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.6923 | 55.5556 | 60.0000 | 97.8032 | 15 | 12 | 15 | 10 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.1429 | 12 | 3 | 12 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.5556 | 65.3846 | 89.4737 | 97.1386 | 17 | 9 | 17 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.9655 | 58.8235 | 83.3333 | 97.9130 | 10 | 7 | 10 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 87.5000 | 77.7778 | 100.0000 | 92.1348 | 7 | 2 | 7 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 39.2277 | 31.6516 | 51.5719 | 45.1410 | 665 | 1436 | 853 | 801 | 448 | 55.9301 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.6127 | 23.8776 | 62.8853 | 50.2149 | 117 | 373 | 510 | 301 | 47 | 15.6146 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 40.2163 | 27.6358 | 73.8220 | 36.9637 | 346 | 906 | 141 | 50 | 12 | 24.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 39.9604 | 56.2674 | 30.9816 | 39.7969 | 202 | 157 | 202 | 450 | 389 | 86.4444 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 57.1429 | 62.5000 | 52.6316 | 97.1168 | 10 | 6 | 10 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 41.6667 | 50.0000 | 35.7143 | 97.5567 | 5 | 5 | 5 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.1860 | 5 | 1 | 5 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 735 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 169 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 439 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 127 | 0 | 0 | 0 | |||