PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36501-36550 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 90.0000 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 90.0000 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 5.5046 | 2.9126 | 50.0000 | 97.1429 | 6 | 200 | 1 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 22.2222 | 100.0000 | 98.2456 | 6 | 21 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 179 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.4348 | 88.0952 | 74.0000 | 97.4937 | 37 | 5 | 37 | 13 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.9661 | 85.1852 | 71.8750 | 97.8261 | 23 | 4 | 23 | 9 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.8485 | 93.3333 | 77.7778 | 96.5583 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.0488 | 100.0000 | 64.0000 | 97.3461 | 16 | 0 | 16 | 9 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 97.8038 | 10 | 0 | 10 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 100.0000 | 60.0000 | 96.1390 | 6 | 0 | 6 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 1.0870 | 100.0000 | 1 | 91 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.1111 | 100.0000 | 1 | 8 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 83 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.3529 | 80.7692 | 84.0000 | 97.6258 | 21 | 5 | 21 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.4706 | 76.4706 | 76.4706 | 97.8454 | 13 | 4 | 13 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.9697 | 8 | 1 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.8472 | 76.6302 | 97.5845 | 55.5436 | 1610 | 491 | 1616 | 40 | 37 | 92.5000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.9657 | 75.7143 | 94.2356 | 75.6856 | 371 | 119 | 376 | 23 | 20 | 86.9565 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9703 | 74.2812 | 99.2529 | 37.7409 | 930 | 322 | 930 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 91.1548 | 86.0724 | 96.8750 | 44.7323 | 309 | 50 | 310 | 10 | 10 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.9686 | 72.3099 | 97.3129 | 50.8954 | 504 | 193 | 507 | 14 | 13 | 92.8571 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.9430 | 62.9630 | 92.5532 | 76.6169 | 85 | 50 | 87 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.9013 | 72.7088 | 99.1667 | 31.9471 | 357 | 134 | 357 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.5529 | 87.3239 | 94.0299 | 48.4615 | 62 | 9 | 63 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.3660 | 78.4928 | 98.5011 | 39.0737 | 927 | 254 | 920 | 14 | 13 | 92.8571 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.3872 | 86.4865 | 94.6565 | 71.5217 | 128 | 20 | 124 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.9189 | 75.5734 | 99.5461 | 25.8137 | 659 | 213 | 658 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 91.7858 | 86.9565 | 97.1831 | 21.9780 | 140 | 21 | 138 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 33.3333 | 98.0132 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 97.6190 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 98.8764 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.5391 | 79.3197 | 97.6589 | 50.7414 | 583 | 152 | 584 | 14 | 14 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.8712 | 78.6982 | 94.4828 | 72.7955 | 133 | 36 | 137 | 8 | 8 | 100.0000 | |