PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36001-36050 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2241 | 56.7961 | 99.1597 | 58.2456 | 117 | 89 | 118 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.1754 | 74.0741 | 66.6667 | 97.0874 | 20 | 7 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 70.2899 | 54.1899 | 100.0000 | 31.7647 | 97 | 82 | 116 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.6552 | 81.2500 | 100.0000 | 97.7193 | 13 | 3 | 13 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.3529 | 70.0000 | 100.0000 | 98.2005 | 7 | 3 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2727 | 65.3846 | 94.4444 | 96.9072 | 17 | 9 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.3430 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 87.5000 | 77.7778 | 100.0000 | 95.7831 | 7 | 2 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.4414 | 79.6287 | 92.1694 | 54.6077 | 1673 | 428 | 1589 | 135 | 130 | 96.2963 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.1831 | 83.0612 | 73.8462 | 79.1933 | 407 | 83 | 240 | 85 | 82 | 96.4706 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.2596 | 74.3610 | 99.9015 | 32.1524 | 931 | 321 | 1014 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.1750 | 93.3148 | 87.2396 | 48.1081 | 335 | 24 | 335 | 49 | 47 | 95.9184 | |
| hfeng-pmm2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 98.0645 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 66.6667 | 97.6378 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.1338 | 86.8027 | 91.5935 | 49.4610 | 638 | 97 | 730 | 67 | 66 | 98.5075 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0685 | 92.3077 | 91.8306 | 51.3613 | 156 | 13 | 607 | 54 | 54 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 81.7768 | 0.0000 | 0.0000 | 359 | 80 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 93.5361 | 96.8504 | 90.4412 | 37.6147 | 123 | 4 | 123 | 13 | 12 | 92.3077 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.4118 | 79.2549 | 90.2866 | 33.4746 | 936 | 245 | 1134 | 122 | 120 | 98.3607 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.9187 | 79.7297 | 93.1494 | 34.9226 | 118 | 30 | 979 | 72 | 70 | 97.2222 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 75.9174 | 0.0000 | 0.0000 | 662 | 210 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.9390 | 96.8944 | 75.6098 | 24.9084 | 156 | 5 | 155 | 50 | 50 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 57.1429 | 50.0000 | 66.6667 | 91.1765 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 93.5484 | 1 | 1 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.4742 | 68.8666 | 91.1972 | 34.5622 | 480 | 217 | 518 | 50 | 47 | 94.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.1595 | 60.7407 | 95.1883 | 35.4926 | 82 | 53 | 455 | 23 | 20 | 86.9565 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 68.2281 | 0.0000 | 0.0000 | 335 | 156 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.2609 | 88.7324 | 70.0000 | 29.1339 | 63 | 8 | 63 | 27 | 27 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.6460 | 66.5049 | 99.2593 | 44.6721 | 137 | 69 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 89.4961 | 81.4815 | 99.2593 | 43.5146 | 22 | 5 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 64.2458 | 0.0000 | 0.0000 | 115 | 64 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.5778 | 77.1739 | 98.5915 | 60.3352 | 71 | 21 | 70 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 93.4891 | 88.8889 | 98.5915 | 57.4850 | 8 | 1 | 70 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 75.9036 | 0.0000 | 0.0000 | 63 | 20 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.6154 | 78.5714 | 91.6667 | 96.0656 | 33 | 9 | 33 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.2039 | 70.3704 | 88.0000 | 96.8983 | 19 | 8 | 22 | 3 | 0 | 0.0000 | |