PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35551-35600 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 94.2308 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 25.9640 | 21.0884 | 33.7719 | 34.7639 | 155 | 580 | 154 | 302 | 292 | 96.6887 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 27.9590 | 17.7515 | 65.7895 | 60.0000 | 30 | 139 | 25 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.1212 | 1.5945 | 73.3333 | 80.5195 | 7 | 432 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.5283 | 92.9134 | 29.2804 | 23.5294 | 118 | 9 | 118 | 285 | 276 | 96.8421 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5758 | 15.3515 | 27.0073 | 33.7097 | 107 | 590 | 111 | 300 | 272 | 90.6667 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 35.9600 | 22.9630 | 82.8571 | 58.3333 | 31 | 104 | 29 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 2.7934 | 1.4257 | 68.7500 | 77.7778 | 7 | 484 | 11 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 32.7901 | 97.1831 | 19.7222 | 22.4138 | 69 | 2 | 71 | 289 | 266 | 92.0415 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 21.5835 | 18.1202 | 26.6833 | 26.4895 | 214 | 967 | 214 | 588 | 544 | 92.5170 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.5806 | 29.7297 | 75.0000 | 50.4762 | 44 | 104 | 39 | 13 | 10 | 76.9231 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 3.5874 | 1.8349 | 80.0000 | 78.6325 | 16 | 856 | 20 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 34.9475 | 95.6522 | 21.3793 | 16.5708 | 154 | 7 | 155 | 570 | 530 | 92.9825 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 12.5000 | 91.6230 | 0 | 0 | 2 | 14 | 9 | 64.2857 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.4912 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 88.4615 | 0 | 0 | 0 | 12 | 8 | 66.6667 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 42.8571 | 0 | 4 | 1 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 6.0167 | 3.3981 | 26.2295 | 42.4528 | 7 | 199 | 32 | 90 | 74 | 82.2222 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.4975 | 22.2222 | 68.0000 | 60.3175 | 6 | 21 | 17 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 1.1080 | 0.5587 | 66.6667 | 84.2105 | 1 | 178 | 2 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 13.8298 | 27.6923 | 0 | 0 | 13 | 81 | 68 | 83.9506 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 15.0000 | 57.4468 | 0 | 92 | 3 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 88.2353 | 0 | 9 | 0 | 2 | 2 | 100.0000 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 83 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 16.6667 | 30.7692 | 0 | 0 | 3 | 15 | 15 | 100.0000 | |
| hfeng-pmm2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.4168 | 88.8435 | 94.1435 | 54.4059 | 653 | 82 | 643 | 40 | 39 | 97.5000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.0662 | 93.4911 | 67.0103 | 81.9367 | 158 | 11 | 65 | 32 | 32 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6049 | 84.5103 | 100.0000 | 35.3276 | 371 | 68 | 454 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 95.7529 | 97.6378 | 93.9394 | 49.0347 | 124 | 3 | 124 | 8 | 7 | 87.5000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2500 | 70.8752 | 95.1830 | 49.0677 | 494 | 203 | 494 | 25 | 23 | 92.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.1947 | 74.8148 | 88.7640 | 73.9003 | 101 | 34 | 79 | 10 | 8 | 80.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.8252 | 67.8208 | 100.0000 | 29.8419 | 333 | 158 | 355 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.1918 | 84.5070 | 80.0000 | 56.3953 | 60 | 11 | 60 | 15 | 15 | 100.0000 | |
| hfeng-pmm2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.8790 | 77.9848 | 93.1104 | 42.5160 | 921 | 260 | 919 | 68 | 68 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.0454 | 79.7297 | 69.1176 | 73.4893 | 118 | 30 | 94 | 42 | 42 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.5100 | 74.7706 | 99.8519 | 27.0270 | 652 | 220 | 674 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 89.6142 | 93.7888 | 85.7955 | 36.9176 | 151 | 10 | 151 | 25 | 25 | 100.0000 | |