PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35301-35350 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.0966 | 87.6813 | 88.5158 | 38.7217 | 21517 | 3023 | 21589 | 2801 | 2559 | 91.3602 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.7284 | 98.2608 | 80.8820 | 41.3226 | 10226 | 181 | 10564 | 2497 | 2416 | 96.7561 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 76.5171 | 62.3875 | 98.9208 | 32.6004 | 4296 | 2590 | 4033 | 44 | 40 | 90.9091 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4687 | 96.5227 | 96.4148 | 36.9062 | 6995 | 252 | 6992 | 260 | 103 | 39.6154 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 77.1877 | 70.6598 | 85.0445 | 46.2575 | 6683 | 2775 | 6784 | 1193 | 1020 | 85.4987 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.5297 | 95.6092 | 75.7515 | 51.0570 | 2613 | 120 | 2999 | 960 | 935 | 97.3958 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.7001 | 46.0184 | 98.3531 | 38.3761 | 2196 | 2576 | 1911 | 32 | 29 | 90.6250 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.0487 | 95.9549 | 90.3133 | 42.3771 | 1874 | 79 | 1874 | 201 | 56 | 27.8607 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.6301 | 80.4167 | 91.5663 | 79.3430 | 386 | 94 | 380 | 35 | 19 | 54.2857 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.2319 | 85.0000 | 87.5000 | 86.9801 | 136 | 24 | 126 | 18 | 8 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 85.4542 | 76.7025 | 96.4602 | 65.3905 | 214 | 65 | 218 | 8 | 7 | 87.5000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.7209 | 87.8049 | 80.0000 | 82.0000 | 36 | 5 | 36 | 9 | 4 | 44.4444 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 78.4352 | 68.5826 | 91.5936 | 64.7059 | 1229 | 563 | 1253 | 115 | 90 | 78.2609 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4816 | 88.0131 | 86.9565 | 72.4315 | 536 | 73 | 560 | 84 | 71 | 84.5238 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 57.0126 | 39.9235 | 99.6805 | 45.7539 | 313 | 471 | 312 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.9523 | 95.2381 | 92.7007 | 57.3209 | 380 | 19 | 381 | 30 | 18 | 60.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.8352 | 87.2704 | 88.4074 | 67.9175 | 31934 | 4658 | 32274 | 4232 | 3738 | 88.3270 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.6622 | 97.0558 | 81.6049 | 51.6846 | 15296 | 464 | 15997 | 3606 | 3454 | 95.7848 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.4016 | 63.6945 | 98.6259 | 40.8078 | 6672 | 3803 | 6316 | 88 | 82 | 93.1818 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.5455 | 96.2248 | 94.8757 | 43.8826 | 9966 | 391 | 9961 | 538 | 202 | 37.5465 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.7405 | 88.7846 | 97.0653 | 58.2458 | 8605 | 1087 | 8798 | 266 | 144 | 54.1353 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.3980 | 87.5241 | 97.8468 | 61.7037 | 5458 | 778 | 5635 | 124 | 11 | 8.8710 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.1611 | 91.0564 | 99.6533 | 48.4903 | 3146 | 309 | 3162 | 11 | 5 | 45.4545 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.1299 | 89.8491 | 96.6594 | 59.1348 | 4346 | 491 | 4456 | 154 | 72 | 46.7532 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5831 | 88.2783 | 97.3293 | 62.2126 | 2779 | 369 | 2879 | 79 | 3 | 3.7975 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9870 | 92.7725 | 99.4322 | 50.3135 | 1566 | 122 | 1576 | 9 | 4 | 44.4444 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 91.7626 | 87.4564 | 96.5147 | 48.4959 | 5013 | 719 | 5040 | 182 | 91 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.0106 | 92.2964 | 91.7266 | 69.6573 | 1258 | 105 | 1275 | 115 | 43 | 37.3913 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.0493 | 86.2286 | 98.7126 | 25.5959 | 3281 | 524 | 3297 | 43 | 35 | 81.3953 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.2397 | 84.0426 | 95.1220 | 53.9757 | 474 | 90 | 468 | 24 | 13 | 54.1667 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 83.2650 | 74.7927 | 93.9018 | 56.7791 | 1804 | 608 | 1817 | 118 | 62 | 52.5424 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.1362 | 81.1475 | 85.2248 | 77.0629 | 396 | 92 | 398 | 69 | 22 | 31.8841 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 83.6839 | 72.6708 | 98.6312 | 33.2487 | 1287 | 484 | 1297 | 18 | 13 | 72.2222 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 79.4104 | 79.0850 | 79.7386 | 67.5159 | 121 | 32 | 122 | 31 | 27 | 87.0968 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2046 | 97.6826 | 98.7322 | 52.3033 | 35744 | 848 | 35667 | 458 | 432 | 94.3231 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8985 | 99.2195 | 98.5796 | 63.0301 | 15637 | 123 | 15477 | 223 | 202 | 90.5830 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.2751 | 93.2220 | 99.5351 | 28.3303 | 9765 | 710 | 9848 | 46 | 46 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0234 | 99.8552 | 98.2053 | 45.9033 | 10342 | 15 | 10342 | 189 | 184 | 97.3545 | |
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||