PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34751-34800 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.6316 | 99.0933 | 94.2892 | 74.2061 | 3060 | 28 | 3071 | 186 | 41 | 22.0430 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1176 | 98.5286 | 99.7136 | 61.8611 | 1741 | 26 | 1741 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 80.0682 | 72.8027 | 88.9447 | 68.9160 | 1756 | 656 | 885 | 110 | 104 | 94.5455 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.6326 | 78.2787 | 89.7727 | 73.4807 | 382 | 106 | 474 | 54 | 50 | 92.5926 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 78.6619 | 71.5415 | 87.3563 | 60.2740 | 1267 | 504 | 304 | 44 | 44 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 78.6765 | 69.9346 | 89.9160 | 64.3713 | 107 | 46 | 107 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.4108 | 95.2812 | 97.5675 | 40.2387 | 23382 | 1158 | 24186 | 603 | 555 | 92.0398 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.6431 | 96.1084 | 99.2277 | 42.1750 | 10002 | 405 | 15032 | 117 | 72 | 61.5385 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.3169 | 89.7764 | 99.3411 | 33.3446 | 6182 | 704 | 1960 | 13 | 13 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4992 | 99.3239 | 93.8307 | 37.7780 | 7198 | 49 | 7194 | 473 | 470 | 99.3658 | |
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.0825 | 75.8761 | 96.8314 | 49.6990 | 18620 | 5920 | 18611 | 609 | 395 | 64.8604 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.2729 | 74.8150 | 96.4680 | 58.6163 | 7786 | 2621 | 7784 | 285 | 97 | 34.0351 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 84.7019 | 75.5446 | 96.3855 | 35.1952 | 5202 | 1684 | 5200 | 195 | 193 | 98.9744 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.5921 | 77.7149 | 97.7589 | 44.5846 | 5632 | 1615 | 5627 | 129 | 105 | 81.3953 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 83.6519 | 73.9268 | 96.3233 | 56.4236 | 6992 | 2466 | 6995 | 267 | 204 | 76.4045 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 79.1172 | 68.0571 | 94.4698 | 74.1440 | 1860 | 873 | 1862 | 109 | 53 | 48.6239 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 85.5129 | 76.5088 | 96.9190 | 34.7374 | 3651 | 1121 | 3649 | 116 | 114 | 98.2759 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.2150 | 75.8321 | 97.2477 | 53.3761 | 1481 | 472 | 1484 | 42 | 37 | 88.0952 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 72.0169 | 58.7500 | 93.0233 | 81.0095 | 282 | 198 | 280 | 21 | 14 | 66.6667 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 56.5401 | 41.8750 | 87.0130 | 90.2900 | 67 | 93 | 67 | 10 | 3 | 30.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 79.8194 | 68.1004 | 96.4103 | 67.2819 | 190 | 89 | 188 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.9324 | 70.9821 | 96.8774 | 72.2175 | 1272 | 520 | 1272 | 41 | 32 | 78.0488 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.8249 | 55.6650 | 93.6464 | 87.2714 | 339 | 270 | 339 | 23 | 17 | 73.9130 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.4669 | 80.2296 | 98.5893 | 38.6538 | 629 | 155 | 629 | 9 | 8 | 88.8889 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.3933 | 76.1905 | 97.1246 | 62.8266 | 304 | 95 | 304 | 9 | 7 | 77.7778 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 83.5750 | 73.9861 | 96.0194 | 60.2412 | 27073 | 9519 | 27065 | 1122 | 616 | 54.9020 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 81.3693 | 71.3832 | 94.6037 | 70.0040 | 11250 | 4510 | 11255 | 642 | 179 | 27.8816 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 84.8964 | 75.6945 | 96.6451 | 41.6459 | 7929 | 2546 | 7922 | 275 | 269 | 97.8182 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.5433 | 76.2190 | 97.4669 | 52.9093 | 7894 | 2463 | 7888 | 205 | 168 | 81.9512 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.4037 | 81.6845 | 89.4777 | 43.9514 | 29890 | 6702 | 33045 | 3886 | 2450 | 63.0468 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.5531 | 82.3858 | 91.1644 | 45.8288 | 12984 | 2776 | 21554 | 2089 | 859 | 41.1202 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 80.6675 | 73.6706 | 89.1329 | 45.4946 | 7717 | 2758 | 2313 | 282 | 188 | 66.6667 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 87.2533 | 88.7226 | 85.8319 | 38.8447 | 9189 | 1168 | 9178 | 1515 | 1403 | 92.6073 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.8869 | 95.0176 | 94.7566 | 72.8903 | 4596 | 241 | 4554 | 252 | 104 | 41.2698 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4478 | 94.6950 | 92.2330 | 77.5820 | 2981 | 167 | 2945 | 248 | 101 | 40.7258 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.6712 | 95.6754 | 99.7520 | 53.7159 | 1615 | 73 | 1609 | 4 | 3 | 75.0000 | |