PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34701-34750 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.8326 | 79.5328 | 98.0666 | 79.9980 | 3847 | 990 | 3855 | 76 | 43 | 56.5789 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.9639 | 78.4943 | 97.4823 | 82.5580 | 2471 | 677 | 2478 | 64 | 33 | 51.5625 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.4671 | 81.5166 | 99.1361 | 72.5927 | 1376 | 312 | 1377 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 82.4404 | 73.1758 | 94.3910 | 71.5718 | 1765 | 647 | 1767 | 105 | 26 | 24.7619 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.8766 | 64.7541 | 80.7595 | 87.1336 | 316 | 172 | 319 | 76 | 1 | 1.3158 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.4484 | 76.9057 | 98.6947 | 50.6089 | 1362 | 409 | 1361 | 18 | 16 | 88.8889 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.3227 | 56.8627 | 88.7755 | 86.4454 | 87 | 66 | 87 | 11 | 9 | 81.8182 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 86.1055 | 77.1255 | 97.4522 | 79.8031 | 7475 | 2217 | 7497 | 196 | 77 | 39.2857 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.9692 | 75.8339 | 96.6071 | 82.4013 | 4729 | 1507 | 4755 | 167 | 52 | 31.1377 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 88.1535 | 79.4790 | 98.9534 | 72.5834 | 2746 | 709 | 2742 | 29 | 25 | 86.2069 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 60.8792 | 59.0648 | 62.8085 | 52.6630 | 21613 | 14979 | 21581 | 12779 | 12331 | 96.4942 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.3555 | 95.9010 | 54.3198 | 55.3205 | 15114 | 646 | 15165 | 12753 | 12310 | 96.5263 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.4010 | 0.0000 | 0.0000 | 42 | 10433 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.6857 | 62.3443 | 99.5964 | 36.2241 | 6457 | 3900 | 6416 | 26 | 21 | 80.7692 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 29.4118 | 94.4444 | 0 | 0 | 10 | 24 | 4 | 16.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 28.1250 | 94.2342 | 0 | 0 | 9 | 23 | 4 | 17.3913 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 50.0000 | 96.4912 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.3374 | 74.7117 | 96.8102 | 79.6075 | 3628 | 1228 | 3642 | 120 | 34 | 28.3333 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 82.8907 | 73.1218 | 95.6723 | 82.2308 | 2258 | 830 | 2277 | 103 | 19 | 18.4466 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.8721 | 77.5325 | 98.7699 | 72.5739 | 1370 | 397 | 1365 | 17 | 15 | 88.2353 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 71.4286 | 60.9756 | 86.2069 | 85.2041 | 25 | 16 | 25 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.2908 | 70.4641 | 96.0486 | 65.7173 | 4039 | 1693 | 4035 | 166 | 29 | 17.4699 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 74.0031 | 64.7102 | 86.4125 | 82.4649 | 882 | 481 | 884 | 139 | 8 | 5.7554 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 84.4268 | 73.3771 | 99.3944 | 39.7122 | 2792 | 1013 | 2790 | 17 | 15 | 88.2353 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 77.7331 | 64.7163 | 97.3046 | 78.9683 | 365 | 199 | 361 | 10 | 6 | 60.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.1275 | 89.5499 | 97.0028 | 61.5094 | 5133 | 599 | 3463 | 107 | 92 | 85.9813 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.4657 | 93.1034 | 95.8683 | 72.1692 | 1269 | 94 | 1369 | 59 | 47 | 79.6610 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.7440 | 88.1997 | 97.7819 | 39.9778 | 3356 | 449 | 1587 | 36 | 36 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.7249 | 90.0709 | 97.6879 | 63.9583 | 508 | 56 | 507 | 12 | 9 | 75.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.3883 | 91.3830 | 95.4836 | 39.3587 | 8643 | 815 | 9408 | 445 | 428 | 96.1798 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0403 | 91.4014 | 98.9810 | 39.0442 | 2498 | 235 | 6994 | 72 | 57 | 79.1667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 93.2232 | 88.4116 | 98.5887 | 45.8515 | 4219 | 553 | 489 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 90.7380 | 98.6175 | 84.0244 | 38.7433 | 1926 | 27 | 1925 | 366 | 364 | 99.4536 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 51.7864 | 37.7083 | 82.6389 | 69.0323 | 181 | 299 | 119 | 25 | 25 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 41.7658 | 28.7500 | 76.3158 | 69.6000 | 46 | 114 | 58 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 54.0397 | 38.7097 | 89.4737 | 72.4638 | 108 | 171 | 34 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.0563 | 65.8537 | 90.0000 | 61.0390 | 27 | 14 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7961 | 98.2976 | 95.3398 | 72.9184 | 9527 | 165 | 9554 | 467 | 126 | 26.9807 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.8251 | 98.5087 | 93.2839 | 75.9171 | 6143 | 93 | 6167 | 444 | 105 | 23.6486 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6157 | 97.9161 | 99.3253 | 64.1874 | 3383 | 72 | 3386 | 23 | 21 | 91.3043 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.0758 | 97.7052 | 94.4998 | 74.6425 | 4726 | 111 | 4742 | 276 | 80 | 28.9855 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0382 | 97.9352 | 92.3077 | 77.3745 | 3083 | 65 | 3096 | 258 | 64 | 24.8062 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0894 | 97.2749 | 98.9176 | 66.3428 | 1642 | 46 | 1645 | 18 | 16 | 88.8889 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5168 | 98.8880 | 96.1831 | 70.9711 | 4802 | 54 | 4813 | 191 | 46 | 24.0838 | |