PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34651-34700 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 16.6667 | 100.0000 | 9.0909 | 84.9315 | 1 | 0 | 1 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4640 | 98.9336 | 100.0000 | 64.4882 | 1670 | 18 | 1679 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1035 | 98.9086 | 99.2991 | 66.9100 | 4803 | 53 | 4817 | 34 | 12 | 35.2941 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1727 | 98.8666 | 99.4807 | 69.4042 | 3053 | 35 | 3065 | 16 | 11 | 68.7500 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 10.5263 | 100.0000 | 5.5556 | 80.4348 | 1 | 0 | 1 | 17 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4598 | 98.9813 | 99.9429 | 61.0494 | 1749 | 18 | 1751 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2571 | 98.0815 | 98.4334 | 52.3164 | 35890 | 702 | 35814 | 570 | 538 | 94.3860 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8361 | 99.3147 | 98.3621 | 62.3698 | 15652 | 108 | 15494 | 258 | 231 | 89.5349 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9298 | 94.4344 | 99.5608 | 32.7290 | 9892 | 583 | 9974 | 44 | 44 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6696 | 99.8938 | 97.4750 | 45.7112 | 10346 | 11 | 10346 | 268 | 263 | 98.1343 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.5888 | 98.8754 | 96.3352 | 68.5340 | 9583 | 109 | 9621 | 366 | 21 | 5.7377 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8322 | 98.8294 | 96.8550 | 70.8320 | 6163 | 73 | 6190 | 201 | 20 | 9.9503 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 6.8966 | 100.0000 | 3.5714 | 80.5556 | 1 | 0 | 1 | 27 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.5247 | 98.9580 | 96.1323 | 63.1557 | 3419 | 36 | 3430 | 138 | 1 | 0.7246 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.9932 | 96.6906 | 97.2976 | 45.4909 | 9145 | 313 | 9145 | 254 | 242 | 95.2756 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.0792 | 98.2071 | 95.9770 | 63.3202 | 2684 | 49 | 2672 | 112 | 106 | 94.6429 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5522 | 94.7192 | 98.4575 | 25.9492 | 4520 | 252 | 4532 | 71 | 69 | 97.1831 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.9067 | 99.3856 | 96.4712 | 41.4606 | 1941 | 12 | 1941 | 71 | 67 | 94.3662 | |
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 83.1933 | 0 | 0 | 0 | 20 | 2 | 10.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 82.6087 | 0 | 0 | 0 | 20 | 2 | 10.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 50.4202 | 43.0804 | 60.7748 | 52.4011 | 772 | 1020 | 753 | 486 | 332 | 68.3128 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 55.3043 | 53.2020 | 57.5796 | 52.8812 | 324 | 285 | 452 | 333 | 230 | 69.0691 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 19.7704 | 0.0000 | 0.0000 | 155 | 629 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.6845 | 73.4336 | 66.2996 | 51.5475 | 293 | 106 | 301 | 153 | 102 | 66.6667 | |
| anovak-vg | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 83.3333 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 13.9241 | 82.0455 | 0 | 0 | 11 | 68 | 4 | 5.8824 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 11.8421 | 81.2808 | 0 | 0 | 9 | 67 | 3 | 4.4776 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 91.1765 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 49.2492 | 43.6456 | 56.5037 | 39.7780 | 4128 | 5330 | 4231 | 3257 | 2430 | 74.6085 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 59.9042 | 65.3860 | 55.2704 | 39.0162 | 1787 | 946 | 3015 | 2440 | 1867 | 76.5164 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 25.3353 | 0.0000 | 0.0000 | 1209 | 3563 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 58.8731 | 57.9621 | 59.8131 | 41.7312 | 1132 | 821 | 1216 | 817 | 563 | 68.9106 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 9.6515 | 5.6250 | 33.9623 | 61.7329 | 27 | 453 | 36 | 70 | 34 | 48.5714 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 11.7647 | 6.8750 | 40.7407 | 67.2727 | 11 | 149 | 22 | 32 | 14 | 43.7500 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 1.4337 | 0.0000 | 0.0000 | 4 | 275 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 28.0467 | 29.2683 | 26.9231 | 53.5714 | 12 | 29 | 14 | 38 | 20 | 52.6316 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 69.0612 | 65.8068 | 72.6543 | 37.5809 | 16149 | 8391 | 16741 | 6301 | 4632 | 73.5121 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.0027 | 83.0403 | 70.0649 | 36.4124 | 8642 | 1765 | 11127 | 4754 | 3440 | 72.3601 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 29.5818 | 0.0000 | 0.0000 | 2037 | 4849 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.9105 | 75.4795 | 78.3969 | 40.0251 | 5470 | 1777 | 5614 | 1547 | 1192 | 77.0524 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 63.5093 | 59.8218 | 67.6813 | 39.7409 | 21890 | 14702 | 30217 | 14429 | 11301 | 78.3214 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.5027 | 72.7855 | 66.5031 | 38.8732 | 11471 | 4289 | 21148 | 10652 | 8272 | 77.6568 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 27.5800 | 0.0000 | 0.0000 | 2889 | 7586 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 71.6357 | 72.7045 | 70.5979 | 41.7864 | 7530 | 2827 | 9069 | 3777 | 3029 | 80.1959 | |