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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 685 686 687 688 689 690 691 692 693 ... 1720 1721 » 34401-34450 / 86044 show all
jmaeng-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.7927	97.6562	97.9295	69.6398	1750	42	1750	37	33	89.1892
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	96.7542	99.0148	94.5946	84.0288	603	6	525	30	27	90.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.5532	95.6633	99.5192	32.7405	750	34	828	4	4	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.3742	99.4987	99.2500	65.9284	397	2	397	3	2	66.6667
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7367	99.6698	99.8037	67.8161	9660	32	9660	19	12	63.1579
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.6872	99.6632	99.7112	69.9339	6215	21	6215	18	12	66.6667
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	95.6522	1	0	1	0	0
jli-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8261	99.6816	99.9710	63.0365	3444	11	3444	1	0	0.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.5254	99.5254	99.5254	68.0722	9646	46	9646	46	24	52.1739
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	het	99.4314	99.5510	99.3121	70.6126	6208	28	6208	43	21	48.8372
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	95.8333	1	0	1	0	0
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6954	99.4790	99.9128	62.0351	3437	18	3437	3	3	100.0000
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	96.8112	94.2777	99.4846	58.4823	5404	328	5405	28	21	75.0000
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.1117	98.9729	99.2509	77.5593	1349	14	1325	10	5	50.0000
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	95.6728	91.8003	99.8864	30.0913	3493	312	3518	4	3	75.0000
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.5965	99.6454	97.5694	72.5584	562	2	562	14	13	92.8571
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.4993	94.2786	98.8271	62.5995	2274	138	2275	27	22	81.4815
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	het	98.4292	98.1557	98.7041	82.3820	479	9	457	6	2	33.3333
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.1648	92.7160	99.8800	39.9063	1642	129	1665	2	2	100.0000
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.1538	100.0000	88.9535	77.1580	153	0	153	19	18	94.7368
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.4853	99.5058	99.4648	66.6987	4832	24	4832	26	14	53.8462
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.3694	99.5142	99.2251	69.4063	3073	15	3073	24	12	50.0000
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	95.8333	1	0	1	0	0
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6881	99.4907	99.8864	60.3693	1758	9	1758	2	2	100.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	98.6166	98.0433	99.1967	49.3156	35876	716	35813	290	255	87.9310
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.9984	98.8832	99.1137	59.5275	15584	176	15433	138	107	77.5362
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.1839	94.9785	99.4942	28.3420	9949	526	10032	51	50	98.0392
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4474	99.8648	99.0334	44.0841	10343	14	10348	101	98	97.0297
jli-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	INDEL	C16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	99.5658	99.5452	99.5863	69.3755	4815	22	4815	20	10	50.0000
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	99.4922	99.5870	99.3976	71.7079	3135	13	3135	19	9	47.3684
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	95.0000	1	0	1	0	0
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7031	99.4668	99.9405	63.6364	1679	9	1679	1	1	100.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	93.2955	91.2500	95.4348	82.0942	438	42	439	21	10	47.6190
jlack-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	91.4848	90.6250	92.3611	89.3727	145	15	133	11	2	18.1818
jlack-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	94.7739	90.6810	99.2537	66.3317	253	26	266	2	1	50.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.8876	97.5610	83.3333	88.5167	40	1	40	8	7	87.5000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	98.4896	97.3839	99.6207	39.3186	23898	642	23900	91	86	94.5055

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