PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34051-34100 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3115 | 96.3071 | 98.3370 | 59.4348 | 15178 | 582 | 15020 | 254 | 229 | 90.1575 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.7068 | 93.6325 | 99.9899 | 31.2313 | 9808 | 667 | 9890 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.9858 | 99.8938 | 98.0942 | 44.9243 | 10346 | 11 | 10346 | 201 | 197 | 98.0100 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.3281 | 98.8960 | 97.7666 | 73.6710 | 9585 | 107 | 9718 | 222 | 62 | 27.9279 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7610 | 98.5407 | 96.9935 | 76.3552 | 6145 | 91 | 6291 | 195 | 48 | 24.6154 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3772 | 99.5369 | 99.2181 | 66.4594 | 3439 | 16 | 3426 | 27 | 14 | 51.8519 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.0837 | 98.5942 | 97.5785 | 75.0150 | 4769 | 68 | 4876 | 121 | 42 | 34.7107 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.4871 | 98.2529 | 96.7332 | 77.3918 | 3093 | 55 | 3198 | 108 | 35 | 32.4074 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2303 | 99.2299 | 99.2308 | 68.4878 | 1675 | 13 | 1677 | 13 | 7 | 53.8462 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.6540 | 89.8499 | 87.4895 | 45.7726 | 8498 | 960 | 9343 | 1336 | 702 | 52.5449 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.0906 | 96.0483 | 86.6196 | 46.4616 | 2625 | 108 | 7477 | 1155 | 540 | 46.7532 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 83.8433 | 0.0000 | 0.0000 | 4001 | 771 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.4462 | 95.8525 | 91.1578 | 42.6611 | 1872 | 81 | 1866 | 181 | 162 | 89.5028 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.8564 | 81.2500 | 91.0165 | 80.0283 | 390 | 90 | 385 | 38 | 24 | 63.1579 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.7571 | 85.6250 | 87.9195 | 87.5626 | 137 | 23 | 131 | 18 | 10 | 55.5556 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.0038 | 78.1362 | 95.6332 | 65.1976 | 218 | 61 | 219 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 81.3953 | 85.3659 | 77.7778 | 82.8244 | 35 | 6 | 35 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.1593 | 87.4776 | 88.8518 | 37.5644 | 21467 | 3073 | 21551 | 2704 | 2453 | 90.7175 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 89.0249 | 97.7996 | 81.6952 | 39.8894 | 10178 | 229 | 10564 | 2367 | 2280 | 96.3245 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 76.6168 | 62.5327 | 98.8894 | 32.4892 | 4306 | 2580 | 4007 | 45 | 40 | 88.8889 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.1705 | 96.3571 | 95.9846 | 35.8391 | 6983 | 264 | 6980 | 292 | 133 | 45.5479 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 77.1982 | 70.9029 | 84.7203 | 46.8070 | 6706 | 2752 | 6831 | 1232 | 1026 | 83.2792 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.9281 | 95.2067 | 76.6525 | 51.6405 | 2602 | 131 | 3073 | 936 | 904 | 96.5812 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 63.3251 | 46.6890 | 98.3795 | 37.6873 | 2228 | 2544 | 1882 | 31 | 28 | 90.3226 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.6463 | 96.0573 | 87.6226 | 43.6282 | 1876 | 77 | 1876 | 265 | 94 | 35.4717 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.4664 | 90.7546 | 96.3452 | 62.2067 | 2189 | 223 | 2188 | 83 | 56 | 67.4699 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5881 | 92.6230 | 92.5532 | 80.7456 | 452 | 36 | 435 | 35 | 16 | 45.7143 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.0865 | 90.1750 | 98.3527 | 42.9913 | 1597 | 174 | 1612 | 27 | 24 | 88.8889 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.2143 | 91.5033 | 87.0370 | 76.6234 | 140 | 13 | 141 | 21 | 16 | 76.1905 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5085 | 97.7714 | 99.2568 | 64.1000 | 9476 | 216 | 9482 | 71 | 46 | 64.7887 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2992 | 97.3060 | 99.3129 | 66.5408 | 6068 | 168 | 6071 | 42 | 21 | 50.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8830 | 98.6107 | 99.1567 | 58.6659 | 3407 | 48 | 3410 | 29 | 25 | 86.2069 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.1160 | 95.4815 | 98.8074 | 51.9618 | 5473 | 259 | 5468 | 66 | 42 | 63.6364 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3687 | 96.7718 | 97.9730 | 70.6802 | 1319 | 44 | 1305 | 27 | 14 | 51.8519 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1506 | 94.9540 | 99.4513 | 30.8218 | 3613 | 192 | 3625 | 20 | 19 | 95.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.2543 | 95.9220 | 96.5889 | 67.3888 | 541 | 23 | 538 | 19 | 9 | 47.3684 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 77.5367 | 69.6429 | 87.4488 | 64.9114 | 1248 | 544 | 1282 | 184 | 127 | 69.0217 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.6705 | 87.5205 | 85.8369 | 72.0400 | 533 | 76 | 600 | 99 | 82 | 82.8283 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 60.0653 | 42.9847 | 99.6711 | 45.3237 | 337 | 447 | 303 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 87.8275 | 94.7368 | 81.8575 | 58.7344 | 378 | 21 | 379 | 84 | 44 | 52.3810 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 80.6452 | 93.0649 | 0 | 0 | 25 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 85.7143 | 93.6364 | 0 | 0 | 18 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 33.3333 | 70.0000 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 85.7143 | 93.4579 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.8620 | 98.3731 | 99.3556 | 61.7355 | 4777 | 79 | 4780 | 31 | 21 | 67.7419 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6805 | 98.0570 | 99.3119 | 64.2623 | 3028 | 60 | 3031 | 21 | 11 | 52.3810 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||