PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
33301-33350 / 86044 show all
gduggal-bwafbINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
100.0000
00000
gduggal-bwafbINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-bwafbINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
gduggal-bwafbINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
86.6953
95.6926
79.2444
84.6511
2266102178346771
15.2034
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.0949
95.8388
73.3424
87.1802
145163107339039
10.0000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
99.1736
100.0000
98.3607
83.9895
206011
100.0000
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.3833
95.4225
89.5317
74.6685
813396507631
40.7895
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
91.3518
88.3601
94.5531
56.1456
17082251788103103
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
88.8144
80.8349
98.5418
47.2042
42610112841919
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
92.8290
88.0297
98.1818
57.6923
8311135411
100.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.5455
97.6190
84.4278
68.9032
451114508383
100.0000
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
93.8883
91.5760
96.3203
46.9726
2929726953405513011239
95.2344
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.6807
90.9033
98.7857
42.8578
11382113923592290233
80.3448
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
91.7011
87.0959
96.8206
45.2421
9672143322237372
98.6301
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.9516
98.5298
89.7799
55.6361
82431238240938934
99.5736
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
0.0000
0414000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
0106000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0286000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
022000
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
41.7820
95.3547
26.7520
84.5618
225811023406407146
2.2788
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
34.2641
93.9894
20.9509
81.3237
1423911507568693
1.6356
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
3.8462
100.0000
1.9608
75.9434
2021003
3.0000
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
72.1995
97.7700
57.2314
91.8059
8331983162150
8.0515
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.9007
77.8470
90.9754
41.3740
862724559355928916
98.7069
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
81.8508
71.2279
96.1979
32.2123
23329426806269258
95.9108
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
83.1109
76.3884
91.1308
38.7228
415412844114040
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
83.4557
90.3376
77.5481
56.6986
21412292138619618
99.8384
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
71.3980
62.1268
83.9216
50.4662
185211291070205197
96.0976
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
70.8362
61.8574
82.8641
49.8157
373230677140133
95.0000
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
74.5996
62.5114
92.4837
50.4052
13698212832322
95.6522
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
64.7059
58.5106
72.3684
53.7994
110781104242
100.0000
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
90.6005
89.5230
91.7043
43.8461
1634619131707915451043
67.5081
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
92.5170
90.9118
94.1799
42.0147
607260710761665217
32.6316
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
88.8708
82.4960
96.3134
28.0265
5632119516726439
60.9375
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.9278
97.6646
85.0604
50.5657
46421114646816787
96.4461
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
41.4402
94.0217
26.5770
81.1312
1038661087300381
2.6973
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
34.5747
92.5000
21.2608
78.3172
66654715264856
2.1148
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
2.5316
100.0000
1.2821
72.3404
101772
2.5974
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
71.8992
96.8668
57.1649
88.9701
3711237127823
8.2734
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
80.3663
84.4740
76.6396
52.9071
501192136811122231
20.5882
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
74.9362
87.5375
65.5063
57.1453
11661661656872119
13.6468
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
87.5446
82.8245
92.8353
37.8851
3337692151611756
47.8632
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
83.8465
88.9667
79.2835
61.5799
5086350913356
42.1053
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
69.9207
56.4189
91.9178
94.1495
13361032134211826
22.0339
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
67.4784
54.4914
88.5928
95.0381
82568983110716
14.9533
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
02000
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
74.3814
59.9765
97.8927
91.3619
5113415111110
90.9091
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
48.9009
46.9867
50.9776
50.1691
1503216960150181444214205
98.3590
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.9906
94.2736
45.0765
50.8414
11804717118381442414189
98.3708