PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 622 623 624 625 626 627 628 629 630 ... 1720 1721 » 31251-31300 / 86044 show all
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.1837	96.7573	97.6138	51.8740	13338	447	13336	326	319	97.8528
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.3847	99.1729	95.6599	68.7214	3837	32	3791	172	166	96.5116
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.8156	94.2210	99.5572	26.7488	6701	411	6745	30	30	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.7654	99.8573	95.7592	54.7998	2800	4	2800	124	123	99.1935
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.4009	91.5493	97.4359	75.4588	455	42	456	12	12	100.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	94.4079	91.7293	97.2477	87.7940	122	11	106	3	3	100.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.9615	90.9091	99.3921	56.0160	310	31	327	2	2	100.0000
ckim-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	86.7925	100.0000	76.6667	88.7218	23	0	23	7	7	100.0000
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	90.8245	87.6365	94.2532	40.4574	33216	4686	32687	1993	1737	87.1550
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.5315	93.3228	87.9023	49.1930	13641	976	12701	1748	1525	87.2426
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	90.7040	83.7402	98.9310	28.6610	11526	2238	11938	129	114	88.3721
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	91.0211	84.5394	98.5791	36.6641	8049	1472	8048	116	98	84.4828
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	85.3420	79.4704	92.1504	48.6116	2551	659	2524	215	182	84.6512
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	76.5556	82.5342	71.3846	62.2751	723	153	464	186	158	84.9462
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	87.7895	79.0971	98.6283	41.6540	1279	338	1510	21	19	90.4762
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	86.1862	76.5690	98.5663	43.2350	549	168	550	8	5	62.5000
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	93.2644	90.8623	95.7970	33.1527	18714	1882	18667	819	734	89.6215
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.3436	96.3164	90.5489	40.3596	7112	272	6879	718	641	89.2758
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	92.6853	87.1155	99.0159	25.1484	7052	1043	7244	72	68	94.4444
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	93.8528	88.9193	99.3658	31.1088	4550	567	4544	29	25	86.2069
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	91.0608	87.8273	94.5415	37.6092	12107	1678	12020	694	633	91.2104
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	89.1325	94.2362	84.5533	48.1916	3646	223	3246	593	548	92.4115
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	91.9132	85.7987	98.9660	29.1571	6102	1010	6413	67	58	86.5672
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	90.7836	84.1298	98.5804	37.3201	2359	445	2361	34	27	79.4118
ckim-isaac	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.2254	99.0858	99.3653	88.4800	1409	13	1409	9	8	88.8889
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1238	99.1238	99.1238	89.4268	905	8	905	8	7	87.5000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.9091	2	0	2	0	0
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.4059	99.0138	99.8012	86.2267	502	5	502	1	1	100.0000
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	0.0000	0.0000	62.5000	81.3953	0	0	5	3	3	100.0000
ckim-dragen	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	0.0000	62.5000	81.3953	0	0	5	3	3	100.0000
ckim-dragen	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	0.0000	0.0000	50.0000	88.2353	0	0	1	1	1	100.0000
ckim-dragen	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	0.0000	50.0000	88.2353	0	0	1	1	1	100.0000
ckim-dragen	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.6346	96.2423	97.0302	52.9948	13267	518	13265	406	403	99.2611
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.8066	99.2505	98.3666	68.3281	3840	29	3794	63	61	96.8254

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge