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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28151-28200 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 79.5918 | 66.1017 | 100.0000 | 69.0476 | 39 | 20 | 39 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.3333 | 100.0000 | 20.0000 | 88.0952 | 1 | 0 | 1 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 87.8155 | 85.8877 | 89.8319 | 60.6862 | 1132 | 186 | 1122 | 127 | 125 | 98.4252 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.3090 | 93.6464 | 70.2970 | 75.8518 | 339 | 23 | 284 | 120 | 119 | 99.1667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 87.5916 | 78.3357 | 99.3277 | 35.7451 | 546 | 151 | 591 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.0530 | 95.3668 | 98.8000 | 56.7474 | 247 | 12 | 247 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.4630 | 88.1350 | 92.9173 | 49.6530 | 2429 | 327 | 2427 | 185 | 180 | 97.2973 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 83.9976 | 93.6170 | 76.1708 | 68.1299 | 572 | 39 | 553 | 173 | 168 | 97.1098 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.6408 | 85.0117 | 99.3911 | 29.8196 | 1452 | 256 | 1469 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.8580 | 92.6773 | 99.2647 | 49.2537 | 405 | 32 | 405 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9078 | 97.1503 | 98.6772 | 90.6644 | 375 | 11 | 373 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.4250 | 96.3768 | 98.4962 | 90.6073 | 266 | 10 | 262 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 99.0990 | 99.0909 | 99.1071 | 90.7970 | 109 | 1 | 111 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.9582 | 95.4751 | 83.2740 | 92.7259 | 211 | 10 | 234 | 47 | 4 | 8.5106 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.3920 | 94.7368 | 77.7251 | 93.0040 | 144 | 8 | 164 | 47 | 4 | 8.5106 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.5294 | 97.1014 | 100.0000 | 91.7160 | 67 | 2 | 70 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 73.9804 | 73.1132 | 74.8684 | 46.1375 | 2015 | 741 | 2276 | 764 | 413 | 54.0576 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 79.9918 | 88.3797 | 73.0580 | 45.8556 | 540 | 71 | 1928 | 711 | 372 | 52.3207 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 66.1007 | 100.0000 | 1129 | 579 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.8053 | 79.1762 | 86.7830 | 47.8544 | 346 | 91 | 348 | 53 | 41 | 77.3585 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.8394 | 89.3309 | 94.4928 | 61.1176 | 5434 | 649 | 5319 | 310 | 299 | 96.4516 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.0894 | 90.4040 | 91.7852 | 74.4242 | 1969 | 209 | 1743 | 156 | 147 | 94.2308 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.5440 | 84.4657 | 99.9171 | 36.7662 | 2300 | 423 | 2411 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.2373 | 98.5618 | 88.4586 | 59.3016 | 1165 | 17 | 1165 | 152 | 150 | 98.6842 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.5473 | 67.1642 | 86.3216 | 61.1351 | 360 | 176 | 467 | 74 | 64 | 86.4865 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.0650 | 84.5638 | 85.5721 | 60.8569 | 126 | 23 | 344 | 58 | 50 | 86.2069 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.9583 | 58.6777 | 100.0000 | 49.7207 | 213 | 150 | 90 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.1120 | 87.5000 | 67.3469 | 73.6559 | 21 | 3 | 33 | 16 | 14 | 87.5000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.7085 | 94.0415 | 83.9479 | 92.5405 | 363 | 23 | 387 | 74 | 11 | 14.8649 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.6095 | 92.7536 | 79.4872 | 92.6630 | 256 | 20 | 279 | 72 | 9 | 12.5000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7252 | 97.2727 | 98.1818 | 92.1090 | 107 | 3 | 108 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.2983 | 56.3218 | 77.6786 | 69.6477 | 49 | 38 | 87 | 25 | 15 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 68.7222 | 62.9630 | 75.6410 | 66.6667 | 17 | 10 | 59 | 19 | 12 | 63.1579 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 70.3297 | 54.2373 | 100.0000 | 61.4286 | 32 | 27 | 27 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 14.2857 | 89.2308 | 0 | 1 | 1 | 6 | 3 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.1466 | 70.0599 | 90.9416 | 60.7394 | 702 | 300 | 763 | 76 | 70 | 92.1053 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7617 | 87.5000 | 90.0602 | 60.8952 | 252 | 36 | 598 | 66 | 60 | 90.9091 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 74.9914 | 61.2342 | 96.7213 | 48.3051 | 387 | 245 | 59 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.1376 | 76.8293 | 92.9825 | 64.4860 | 63 | 19 | 106 | 8 | 8 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.4623 | 92.1212 | 85.0829 | 92.3011 | 152 | 13 | 154 | 27 | 7 | 25.9259 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.0387 | 90.3226 | 82.1429 | 92.1875 | 112 | 12 | 115 | 25 | 5 | 20.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.3260 | 97.5610 | 95.1220 | 92.6391 | 40 | 1 | 39 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.5530 | 86.6267 | 94.8521 | 57.6727 | 868 | 134 | 866 | 47 | 35 | 74.4681 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.1073 | 88.5417 | 91.7293 | 71.7322 | 255 | 33 | 244 | 22 | 12 | 54.5455 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0226 | 86.5506 | 98.2332 | 38.6117 | 547 | 85 | 556 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9816 | 80.4878 | 81.4815 | 72.4490 | 66 | 16 | 66 | 15 | 14 | 93.3333 | |