PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 384 385 386 387 388 389 390 391 392 ... 1720 1721 » 19351-19400 / 86044 show all
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000	0.0000	0.0000	0	1	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	1	0	0	0
ckim-isaac	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	0.0000	0.0000	62.5000	87.0968	0	1	5	3	3	100.0000
ckim-dragen	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	1	0	0	0
ckim-dragen	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	0.0000	62.5000	87.0968	0	0	5	3	3	100.0000
ckim-dragen	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	0.0000	0.0000	66.6667	86.3636	0	0	2	1	1	100.0000
ckim-dragen	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.0556	96.6386	97.4762	58.8481	17077	594	17071	442	432	97.7376
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8754	99.0250	98.7263	71.7769	5789	57	5736	74	67	90.5405
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4252	93.5104	99.5276	29.6399	7536	523	7584	36	36	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.5913	99.6283	91.8687	63.3516	3752	14	3751	332	329	99.0964
ckim-dragen	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.6571	96.7320	98.6000	85.4100	1480	50	1479	21	15	71.4286
ckim-dragen	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.8572	96.8468	98.8889	88.9182	645	21	623	7	2	28.5714
ckim-dragen	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.7620	95.9029	99.6947	70.9147	632	27	653	2	2	100.0000
ckim-dragen	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.6667	99.0244	94.4186	90.8276	203	2	203	12	11	91.6667
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0410	96.8402	99.2720	68.1668	15569	508	15546	114	94	82.4561
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8861	98.5202	99.2547	76.5663	6325	95	6259	47	29	61.7021
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.6618	93.5550	99.9821	38.6326	5516	380	5573	1	1	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6864	99.1226	98.2540	71.3658	3728	33	3714	66	64	96.9697
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.1519	97.5866	98.7237	61.6188	30650	758	30631	396	367	92.6768
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2085	99.0041	99.4137	68.4982	13620	137	13565	80	52	65.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4901	93.6175	99.5447	31.6449	8698	593	8745	40	40	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.2063	99.6651	96.7896	65.1548	8332	28	8321	276	275	99.6377
ckim-dragen	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	0.0000	0.0000	100.0000	66.6667	0	0	1	0	0
ckim-dragen	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	0.0000	100.0000	66.6667	0	0	1	0	0
ckim-dragen	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	0.0000	66.6667	86.3636	0	0	2	1	1	100.0000
ckim-dragen	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	96.3866	96.7594	96.0167	76.6953	4837	162	4821	200	138	69.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.5003	98.6256	94.4647	86.9451	1794	25	1553	91	38	41.7582
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.2055	93.3713	99.2172	39.1486	1803	128	2028	16	16	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.0496	99.2794	93.0233	76.1666	1240	9	1240	93	84	90.3226
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.9331	96.8097	99.0829	51.7183	30406	1002	31224	289	257	88.9273
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.0981	96.8525	99.3761	51.0664	13324	433	22937	144	122	84.7222
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	94.1987	0.0000	0.0000	8752	539	0	0	0
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9561	99.6411	98.2804	53.4169	8330	30	8287	145	135	93.1034
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.9081	96.5168	99.3401	63.4667	15517	560	15655	104	87	83.6538
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.0389	96.6511	99.4672	62.4367	6205	215	11948	64	47	73.4375
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	94.5047	0.0000	0.0000	5572	324	0	0	0
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1864	99.4416	98.9325	66.4187	3740	21	3707	40	40	100.0000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.3852	95.7925	99.0319	61.6504	6056	266	6342	62	53	85.4839
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.6696	96.0426	99.3526	60.4030	1893	78	5525	36	28	77.7778
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	94.7533	0.0000	0.0000	3341	185	0	0	0
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.2572	99.6364	96.9158	68.2486	822	3	817	26	25	96.1538

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge