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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
19001-19050 / 86044 show all
dgrover-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9367
98.4377
99.4408
75.9589
449887144498825334
13.4387
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9180
98.7044
99.1325
79.1132
283403722834024829
11.6935
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9677
97.9853
99.9699
67.4084
166333421663355
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9598
98.5931
99.3293
80.6409
14366205143669714
14.4330
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8377
98.6970
98.9788
83.4427
901411990149310
10.7527
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1639
98.4142
99.9251
72.5328
533786533744
100.0000
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.6332
88.2406
95.2970
51.5896
15593207816717825785
95.1515
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
93.0148
88.2142
98.3681
47.4010
515768911935198162
81.8182
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
90.8745
84.4894
98.3036
44.9837
6809125011592020
100.0000
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.6674
96.3091
85.6501
61.6361
36271393623607603
99.3410
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
77.8141
67.6306
91.6078
59.9900
13336382205202194
96.0396
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.2155
68.0091
89.3048
56.7130
239811286688079
98.7500
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
83.8326
78.4242
90.0421
57.6603
6471786427169
97.1831
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.3784
95.4685
95.2885
77.7755
436312071437262162267
12.3497
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.3271
95.6499
93.0405
79.9739
274631249275532061214
10.3833
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
93.8525
1501500
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.2224
95.1576
99.3788
72.1373
161538221615810153
52.4752
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.6219
95.5496
95.6944
76.1461
297571386298271342182
13.5618
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.6420
95.6229
93.6811
78.6041
18722857187841267139
10.9708
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.7273
1201200
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.3336
95.4207
99.3247
69.8100
11023529110317543
57.3333
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.8642
95.2989
94.4335
80.6105
138866851391182085
10.3659
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
93.6596
95.7079
91.6972
82.3440
8741392876979475
9.4458
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
93.8525
1501500
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.9845
94.5971
99.4954
76.1070
513029351272610
38.4615
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.7223
87.9766
95.8011
68.6010
14144193312617553435
78.6618
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.2978
89.3146
95.4870
71.2322
57346866813322214
66.4596
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
89.6510
84.0909
95.9984
54.3693
495893823519896
97.9592
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.9836
91.7841
96.2911
69.5456
34523093453133125
93.9850
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.7146
92.7089
96.8091
59.8061
29118229029975988774
78.3401
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.6799
93.0581
98.4538
59.4166
1280295519039299108
36.1204
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.7620
87.2242
99.0507
45.1542
8104118727132626
100.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2994
98.2297
92.5388
63.5670
82121488223663640
96.5309
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
43.4388
29.2157
84.6482
63.0999
44710833977271
98.6111
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
33.0430
20.5706
83.9344
60.8974
1375292564949
100.0000
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
49.6249
35.0531
84.9315
68.9362
231428621111
100.0000
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
53.3784
38.5366
86.8132
64.4531
79126791211
91.6667
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
50.0000
96.3237
00626217
27.4194
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
41.9048
96.6074
00446116
26.2295
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
94.7368
93.1655
001811
100.0000
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.5868
37.3203
44.4800
81.8709
571959556694384
55.3314
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
55.3143
76.7267
43.2455
81.7971
511155509668383
57.3353