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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 376 377 378 379 380 381 382 383 384 ... 1720 1721 » 18951-19000 / 86044 show all
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	89.7782	82.5984	98.3250	32.1288	4870	1026	4931	84	71	84.5238
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	87.7042	78.9949	98.5719	61.4567	2971	790	2968	43	28	65.1163
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	94.1491	90.4125	98.2078	67.8829	13174	1397	13261	242	122	50.4132
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.0520	90.0033	98.4822	69.9861	8220	913	8305	128	13	10.1562
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	88.8889	80.0000	100.0000	79.6610	12	3	12	0	0
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.2859	91.1304	99.8384	63.0944	4942	481	4944	8	5	62.5000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.0302	97.5303	98.5353	67.8515	63737	1614	63506	944	836	88.5593
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5995	98.7927	98.4071	74.5792	30112	368	29653	480	385	80.2083
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.1302	92.8764	99.6203	36.5800	15515	1190	15743	60	60	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7459	99.6917	97.8179	67.5313	18110	56	18110	404	391	96.7822
ckim-vqsr	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.2166	90.2898	98.5006	65.6575	25924	2788	26146	398	31	7.7889
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	88.8889	80.0000	100.0000	79.6610	12	3	12	0	0
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.2997	91.1929	99.7939	58.4384	15480	1495	15495	32	23	71.8750
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	94.4491	90.7138	98.5051	60.8883	28251	2892	28401	431	172	39.9072
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.2933	90.4234	98.5092	63.1853	17704	1875	17841	270	18	6.6667
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	85.7143	75.0000	100.0000	76.9231	9	3	9	0	0
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	95.3063	91.2223	99.7730	55.8289	10538	1014	10551	24	18	75.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	71.7619	59.4118	90.5941	73.3930	909	621	915	95	49	51.5789
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	71.5265	61.2613	85.9244	78.5005	408	258	409	67	27	40.2985
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	68.7152	52.6555	98.8701	55.1331	347	312	350	4	4	100.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	80.4824	75.1220	86.6667	77.3014	154	51	156	24	18	75.0000
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	82.0986	72.9041	93.9468	53.8786	4609	1713	4625	298	190	63.7584
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	81.8319	77.0675	87.2242	66.9862	1519	452	1502	220	128	58.1818
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	81.7466	69.7674	98.6920	34.2284	2460	1066	2490	33	24	72.7273
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	84.0119	76.3636	93.3628	58.1998	630	195	633	45	38	84.4444
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	94.3555	90.6219	98.4100	63.4241	41416	4286	41653	673	294	43.6850
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.9263	98.3656	99.4933	72.9052	30634	509	30634	156	20	12.8205
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.9555	98.7078	99.2044	76.2044	19326	253	19326	155	19	12.2581
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	100.0000	100.0000	100.0000	92.7273	12	0	12	0	0
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8752	97.7839	99.9911	64.2557	11296	256	11296	1	1	100.0000
dgrover-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000	0.0000	0.0000	0	1	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	1	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.2689	97.4195	97.1188	75.1529	4870	129	4854	144	103	71.5278
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.4629	98.9555	94.0928	85.7865	1800	19	1561	98	66	67.3469
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.9108	94.6142	99.3217	39.0251	1827	104	2050	14	14	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.4945	99.5196	97.4902	74.7924	1243	6	1243	32	23	71.8750
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.3188	98.0964	98.5422	67.5554	64107	1244	63878	945	830	87.8307
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.6759	98.9370	98.4161	73.8431	30156	324	29701	478	383	80.1255
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.1310	94.7620	99.6215	40.8094	15830	875	16056	61	59	96.7213
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7709	99.7523	97.8086	67.6045	18121	45	18121	406	388	95.5665

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