PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18851-18900 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 77.6152 | 64.0108 | 98.5632 | 45.9265 | 10693 | 6012 | 10153 | 148 | 131 | 88.5135 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.6374 | 95.8769 | 95.3990 | 63.4546 | 17417 | 749 | 17417 | 840 | 435 | 51.7857 | |
| egarrison-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| egarrison-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 93.4915 | 90.6675 | 96.4971 | 60.4318 | 5732 | 590 | 5730 | 208 | 164 | 78.8462 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0820 | 92.6941 | 95.5121 | 71.6510 | 1827 | 144 | 1809 | 85 | 58 | 68.2353 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 93.5628 | 88.9960 | 98.6237 | 42.7471 | 3138 | 388 | 3153 | 44 | 40 | 90.9091 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8070 | 92.9697 | 90.6730 | 69.1101 | 767 | 58 | 768 | 79 | 66 | 83.5443 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9850 | 98.7098 | 99.2618 | 74.4815 | 14383 | 188 | 14387 | 107 | 31 | 28.9720 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7264 | 98.4342 | 99.0203 | 74.1270 | 8990 | 143 | 8995 | 89 | 19 | 21.3483 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 15 | 0 | 15 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4177 | 99.1702 | 99.6664 | 74.8848 | 5378 | 45 | 5377 | 18 | 12 | 66.6667 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 75.9304 | 73.7693 | 78.2218 | 69.0738 | 48209 | 17142 | 62008 | 17264 | 16584 | 96.0612 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.1102 | 86.0761 | 92.3660 | 60.6253 | 26236 | 4244 | 33152 | 2740 | 2400 | 87.5912 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 48.1230 | 32.2658 | 94.6289 | 66.5252 | 5390 | 11315 | 7611 | 432 | 407 | 94.2130 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.4961 | 91.2859 | 60.1211 | 52.5391 | 16583 | 1583 | 21245 | 14092 | 13777 | 97.7647 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 60.9756 | 95.2326 | 0 | 0 | 25 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 88.8889 | 95.9276 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 60.0000 | 96.1240 | 0 | 0 | 6 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.2257 | 0 | 0 | 11 | 11 | 9 | 81.8182 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0697 | 98.8184 | 99.3222 | 69.4679 | 30775 | 368 | 30774 | 210 | 73 | 34.7619 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8292 | 98.5239 | 99.1363 | 69.4693 | 19290 | 289 | 19284 | 168 | 37 | 22.0238 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.4894 | 12 | 0 | 12 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4755 | 99.3161 | 99.6354 | 69.3829 | 11473 | 79 | 11478 | 42 | 36 | 85.7143 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.0336 | 96.1684 | 97.9144 | 65.7408 | 15461 | 616 | 15446 | 329 | 175 | 53.1915 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.1627 | 97.3832 | 96.9432 | 73.2443 | 6252 | 168 | 6216 | 196 | 67 | 34.1837 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7392 | 94.5387 | 99.0446 | 39.1669 | 5574 | 322 | 5598 | 54 | 50 | 92.5926 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.2567 | 96.6498 | 97.8712 | 70.9851 | 3635 | 126 | 3632 | 79 | 58 | 73.4177 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0424 | 98.7834 | 99.3028 | 71.2490 | 45146 | 556 | 45149 | 317 | 104 | 32.8076 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7965 | 98.4954 | 99.0994 | 71.1241 | 28280 | 432 | 28279 | 257 | 56 | 21.7899 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 15 | 0 | 15 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4570 | 99.2695 | 99.6453 | 71.3824 | 16851 | 124 | 16855 | 60 | 48 | 80.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 82.9268 | 96.4777 | 0 | 0 | 34 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 95.3168 | 0 | 0 | 51 | 17 | 13 | 76.4706 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 38.9610 | 93.9655 | 0 | 0 | 30 | 47 | 29 | 61.7021 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 49.9555 | 43.2887 | 59.0497 | 58.0143 | 2164 | 2835 | 2150 | 1491 | 1450 | 97.2502 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 64.1207 | 64.2111 | 64.0306 | 63.4499 | 1168 | 651 | 1004 | 564 | 554 | 98.2270 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 28.2195 | 16.6235 | 93.3071 | 68.0905 | 321 | 1610 | 474 | 34 | 33 | 97.0588 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 47.8556 | 54.0432 | 42.9393 | 43.9068 | 675 | 574 | 672 | 893 | 863 | 96.6405 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 28.4209 | 18.3007 | 63.5810 | 52.0444 | 280 | 1250 | 522 | 299 | 297 | 99.3311 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 31.0297 | 20.4204 | 64.5833 | 56.8123 | 136 | 530 | 217 | 119 | 119 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 16.5137 | 9.1047 | 88.6667 | 60.4222 | 60 | 599 | 133 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 45.5773 | 40.9756 | 51.3433 | 39.6396 | 84 | 121 | 172 | 163 | 161 | 98.7730 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 77.4599 | 71.6987 | 84.2278 | 56.4520 | 11527 | 4550 | 21313 | 3991 | 3815 | 95.5901 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.9543 | 91.5421 | 94.4108 | 58.8410 | 5877 | 543 | 11520 | 682 | 569 | 83.4311 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 53.7340 | 37.1777 | 96.8750 | 57.0119 | 2192 | 3704 | 3317 | 107 | 99 | 92.5234 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 77.4574 | 91.9436 | 66.9147 | 52.7787 | 3458 | 303 | 6476 | 3202 | 3147 | 98.2823 | |