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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18501-18550 / 86044 show all
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.2598
90.9752
82.0090
83.7372
132561315130872871130
4.5280
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
82.0117
91.2515
74.4710
86.1394
833479982352823102
3.6132
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
6.6667
0.0000
0.0000
114000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.7012
90.7431
99.0204
73.2912
492150248524828
58.3333
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.6764
39.2603
64.0343
80.0683
256573969430253169924936
29.0490
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
44.0360
38.0774
52.2053
83.4017
116061887414180129822052
15.8065
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
49.0771
33.9479
88.5320
66.3182
5671110345705739624
84.4384
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
57.4173
46.1301
76.0173
74.8627
838097861036832712260
69.0920
gduggal-snapplatINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
0.0000
04999000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
01819000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
01931000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
01249000
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.2431
51.8849
69.0334
76.6255
16296151122114794864195
44.2231
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
57.2793
53.5509
61.5656
80.5733
736763901011463141790
28.3497
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
54.8241
40.1571
86.3699
66.0570
373155603783597508
85.0921
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
67.4881
62.1770
73.7913
70.7459
51983162725025751897
73.6699
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
41.0970
29.3534
68.5039
74.9565
171641301479680172
25.2941
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
51.1480
34.9051
95.6654
53.7872
281352462825128108
84.3750
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
55.0977
41.6888
81.2222
64.9260
157021961462338247
73.0769
gduggal-snapplatINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
73.1099
94.8597
59.4736
81.1920
13822749139659516255
2.6797
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.2291
94.8867
50.8665
79.7967
866646788068506164
1.9281
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapplatINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
33.3333
95.5224
01120
0.0000
gduggal-snapplatINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
96.1538
01020
0.0000
gduggal-snapplatINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
100.0000
00000
gduggal-snapplatINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
100.0000
88.8889
00100
gduggal-snapvardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
32.2896
88.3995
0016534661
17.6301
gduggal-snapvardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
30.5499
87.9361
0015034158
17.0088
gduggal-snapvardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
75.0000
94.0299
001553
60.0000
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
55.1228
49.5784
62.0635
51.0444
87618910897554864728
86.1830
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
67.5308
74.8546
61.5124
50.8317
43761470872854614703
86.1198
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
49.7829
0.0000
0.0000
40124047000
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
17.8608
9.9044
90.8088
60.0587
37333932472525
100.0000
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
1.5317
0.7843
32.5163
68.9024
121518199413192
46.4891
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
3.4141
1.8018
32.4590
68.7660
12654198412191
46.3592
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.0000
0.0000
0659000
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
0.0000
0.0000
50.0000
86.6667
0205111
100.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
64.3466
65.7191
63.0303
66.4559
1056555111334178256132
78.3642
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.3469
89.3925
59.3632
66.7339
57396811135577736089
78.3353