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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
17001-17050 / 86044 show all
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
83.0948
80.0643
86.3636
58.1871
249622473938
97.4359
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.3372
98.5927
92.2897
84.7602
1064915210677892112
12.5561
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.4033
98.6198
88.7109
85.7951
678895681386796
11.0727
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.1039
30300
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8782
93.0607
96.7682
51.4476
20706154421469717639
89.1213
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.2950
93.8423
98.8793
50.2372
78795171358815479
51.2987
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
93.3120
87.8747
99.4664
36.3431
718299122371212
100.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.0569
99.3663
91.1057
57.4139
5645365644551548
99.4555
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
43.4690
29.6943
81.0811
66.1792
2044831503534
97.1429
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
31.6497
19.5122
83.7398
62.9518
481981032020
100.0000
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
47.7273
35.0000
75.0000
70.9091
1332472488
100.0000
gduggal-bwafbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
50.5495
37.7049
76.6667
71.4286
23382376
85.7143
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.6223
87.8582
95.7234
63.6163
738810215842261219
83.9080
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.6625
90.2806
95.1736
68.0131
22202392879146107
73.2877
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
91.1540
85.5407
97.5559
42.8699
408269018764746
97.8723
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.1414
92.1902
94.1126
70.7669
10869210876866
97.0588
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.1017
89.1985
95.2002
47.3849
13188159714241718698
97.2145
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.8831
89.7436
98.4229
41.9180
399045610235164145
88.4146
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
91.6751
85.4753
98.8445
42.9599
613210429411111
100.0000
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
90.5202
96.8720
84.9501
59.2685
3066993065543542
99.8158
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5044
99.4538
99.5551
80.0137
1074259107424817
35.4167
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3536
99.3753
99.3320
81.7241
68404368404615
32.6087
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
30300
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7697
99.5913
99.9487
76.0057
389916389922
100.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5417
99.5043
99.5791
77.6913
6624336624289
32.1429
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.4104
99.4573
99.3635
79.6751
4215234215278
29.6296
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.7500
20200
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7720
99.5863
99.9585
72.9893
240710240711
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.6974
94.6626
98.8216
55.5793
368920836904437
84.0909
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.1602
97.5584
98.7696
74.5081
91923883115
45.4545
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.3003
93.0030
99.8400
33.3511
2459185249644
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.5453
100.0000
91.4706
70.3833
31103112928
96.5517
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.1046
97.0494
97.1598
70.1203
3947120393411599
86.0870
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.1031
98.9474
93.4177
83.9735
13161411077865
83.3333
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4603
93.8144
99.2597
35.4174
154710217431313
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7250
99.6324
97.8339
67.7720
1084410842421
87.5000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3304
96.9158
97.7485
53.9045
1432945614327330320
96.9697
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6437
99.1903
96.1445
69.5777
4410364364175167
95.4286
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8070
94.2013
99.5609
27.3655
675841668023030
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0003
99.8736
96.1960
56.0166
316143161125123
98.4000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.3747
93.0131
97.8593
82.1067
639486401412
85.7143
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.1978
94.7154
97.7273
88.5833
2331321553
60.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9242
90.7895
99.4536
60.9392
3453536422
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.5736
100.0000
89.7059
91.4033
6106177
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2264
95.2551
99.2811
61.5901
801039980105849
84.4828
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8899
98.7393
99.0409
76.8376
24283123752314
60.8696
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0708
92.4769
99.9552
27.1601
4413359446622
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2353
99.2360
97.2546
73.3953
1169911693333
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0475
97.3843
98.7198
54.0333
2166858221669281267
95.0178
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.9346
99.2616
98.6098
64.3360
8334628299117105
89.7436