PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1601-1650 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | * | * | 99.1158 | 98.9272 | 99.3052 | 22.3384 | 2063143 | 22374 | 2054412 | 14373 | 2372 | 16.5032 | |
| gduggal-snapvard | SNP | ti | * | het | 98.9307 | 98.9471 | 98.9142 | 25.7701 | 1268399 | 13497 | 1263991 | 13875 | 2046 | 14.7459 | |
| gduggal-snapvard | SNP | ti | * | hetalt | 0.0000 | 1.0309 | 0.0000 | 0.0000 | 6 | 576 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | * | homalt | 99.4493 | 98.9663 | 99.9370 | 16.0694 | 794738 | 8301 | 790421 | 498 | 326 | 65.4618 | |
| ghariani-varprowl | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | * | * | 49.9163 | 35.9727 | 81.5114 | 64.7243 | 9386 | 16706 | 8068 | 1830 | 539 | 29.4536 | |
| gduggal-snapplat | INDEL | D6_15 | * | het | 45.6195 | 33.7388 | 70.4153 | 67.7429 | 3911 | 7681 | 3018 | 1268 | 180 | 14.1956 | |
| gduggal-snapplat | INDEL | D6_15 | * | hetalt | 51.3567 | 35.1358 | 95.3989 | 60.4943 | 2872 | 5302 | 2882 | 139 | 111 | 79.8561 | |
| gduggal-snapplat | INDEL | D6_15 | * | homalt | 55.1666 | 41.1476 | 83.6743 | 63.6351 | 2603 | 3723 | 2168 | 423 | 248 | 58.6288 | |
| gduggal-snapplat | INDEL | I16_PLUS | * | * | 0.0000 | 0.0157 | 0.0000 | 0.0000 | 1 | 6376 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2718 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0477 | 0.0000 | 0.0000 | 1 | 2097 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1561 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | * | * | 71.4286 | 100.0000 | 5 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | * | het | 71.4286 | 100.0000 | 5 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | * | * | * | 76.4210 | 69.0418 | 85.5664 | 67.7420 | 237878 | 106664 | 258555 | 43614 | 6600 | 15.1328 | |
| gduggal-snapplat | INDEL | * | * | het | 75.6756 | 70.3729 | 81.8427 | 68.5533 | 136617 | 57516 | 150007 | 33280 | 2606 | 7.8305 | |
| gduggal-snapplat | INDEL | * | * | hetalt | 51.2002 | 36.0859 | 88.1005 | 81.7746 | 9107 | 16130 | 9151 | 1236 | 915 | 74.0291 | |
| gduggal-snapplat | INDEL | * | * | homalt | 81.6385 | 73.6219 | 91.6144 | 63.4553 | 92154 | 33018 | 99397 | 9098 | 3079 | 33.8426 | |
| gduggal-snapplat | INDEL | C1_5 | * | * | 14.8148 | 40.0000 | 9.0909 | 92.7632 | 4 | 6 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | het | 0.0000 | 33.3333 | 0.0000 | 92.0354 | 3 | 6 | 0 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | * | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 93.5484 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | * | * | 84.8354 | 80.9636 | 89.0961 | 66.8161 | 118810 | 27935 | 139871 | 17118 | 4621 | 26.9950 | |
| gduggal-snapplat | INDEL | D1_5 | * | het | 85.0942 | 83.0201 | 87.2745 | 66.1285 | 72704 | 14870 | 86462 | 12607 | 2010 | 15.9435 | |
| gduggal-snapplat | INDEL | D1_5 | * | hetalt | 56.5026 | 42.2548 | 85.2469 | 84.6995 | 4329 | 5916 | 4403 | 762 | 572 | 75.0656 | |
| gduggal-snapplat | INDEL | D1_5 | * | homalt | 88.9829 | 85.3881 | 92.8936 | 64.0746 | 41777 | 7149 | 49006 | 3749 | 2039 | 54.3878 | |
| gduggal-snapplat | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 6784 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3159 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1933 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1692 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | * | * | 50.7754 | 45.6827 | 57.1459 | 41.2412 | 11338 | 13481 | 13483 | 10111 | 8109 | 80.1998 | |
| gduggal-snapvard | INDEL | I6_15 | * | het | 64.9859 | 82.1571 | 53.7516 | 42.4853 | 8242 | 1790 | 11591 | 9973 | 7974 | 79.9559 | |