PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15801-15850 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 59.6441 | 58.6663 | 60.6552 | 76.8269 | 38339 | 27012 | 38291 | 24838 | 23765 | 95.6800 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.8130 | 95.1115 | 55.1450 | 68.5922 | 28990 | 1490 | 29105 | 23674 | 22789 | 96.2617 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.8620 | 0.0000 | 0.0000 | 144 | 16561 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 64.5118 | 50.6716 | 88.7536 | 66.8832 | 9205 | 8961 | 9186 | 1164 | 976 | 83.8488 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.9733 | 91.1887 | 83.1303 | 79.6742 | 28398 | 2744 | 28182 | 5719 | 224 | 3.9168 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 82.7666 | 91.0205 | 75.8851 | 82.6190 | 17820 | 1758 | 17704 | 5626 | 180 | 3.1994 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1902 | 91.5599 | 99.1202 | 67.5348 | 10577 | 975 | 10478 | 93 | 44 | 47.3118 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.2598 | 90.9752 | 82.0090 | 83.7372 | 13256 | 1315 | 13087 | 2871 | 130 | 4.5280 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 82.0117 | 91.2515 | 74.4710 | 86.1394 | 8334 | 799 | 8235 | 2823 | 102 | 3.6132 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.7012 | 90.7431 | 99.0204 | 73.2912 | 4921 | 502 | 4852 | 48 | 28 | 58.3333 | |
| ghariani-varprowl | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.0910 | 79.0543 | 85.3704 | 89.9548 | 11519 | 3052 | 11560 | 1981 | 144 | 7.2691 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 78.7301 | 78.1671 | 79.3012 | 91.5881 | 7139 | 1994 | 7172 | 1872 | 98 | 5.2350 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.2507 | 80.5274 | 97.6127 | 83.3538 | 4367 | 1056 | 4375 | 107 | 45 | 42.0561 | |
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1530 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 666 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 659 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 205 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.7638 | 36.3625 | 49.0496 | 86.4561 | 5846 | 10231 | 5987 | 6219 | 484 | 7.7826 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 31.6043 | 34.3302 | 29.2795 | 88.3797 | 2204 | 4216 | 2292 | 5536 | 84 | 1.5173 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 51.4209 | 36.9403 | 84.5736 | 68.1324 | 2178 | 3718 | 2182 | 398 | 329 | 82.6633 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 53.2289 | 38.9258 | 84.1491 | 87.7362 | 1464 | 2297 | 1513 | 285 | 71 | 24.9123 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 21.7391 | 91.7857 | 0 | 0 | 5 | 18 | 3 | 16.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 21.7391 | 91.3858 | 0 | 0 | 5 | 18 | 3 | 16.6667 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 89.5433 | 87.3487 | 91.8510 | 85.8019 | 27203 | 3940 | 27288 | 2421 | 244 | 10.0785 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.6106 | 86.8839 | 88.3495 | 88.3802 | 17011 | 2568 | 17070 | 2251 | 184 | 8.1741 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.0000 | 91.6667 | 84.6154 | 94.6058 | 11 | 1 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 92.9747 | 88.1319 | 98.3807 | 75.7191 | 10181 | 1371 | 10207 | 168 | 59 | 35.1190 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 37.1926 | 25.0079 | 72.5332 | 64.8432 | 1581 | 4741 | 1529 | 579 | 94 | 16.2349 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 22.9777 | 16.1847 | 39.5973 | 75.5015 | 319 | 1652 | 295 | 450 | 6 | 1.3333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 47.4332 | 31.5939 | 95.1220 | 44.9136 | 1114 | 2412 | 1092 | 56 | 43 | 76.7857 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 28.2151 | 17.9394 | 66.0465 | 75.3157 | 148 | 677 | 142 | 73 | 45 | 61.6438 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.1882 | 84.7031 | 89.8235 | 87.4240 | 38711 | 6991 | 38837 | 4400 | 387 | 8.7955 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 84.7824 | 84.1112 | 85.4645 | 89.6399 | 24150 | 4562 | 24242 | 4123 | 282 | 6.8397 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.5045 | 85.7025 | 98.1490 | 78.6703 | 14548 | 2427 | 14582 | 275 | 104 | 37.8182 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 57.9193 | 56.2153 | 59.7299 | 62.4801 | 36735 | 28612 | 56563 | 38135 | 29523 | 77.4171 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 66.4735 | 78.6403 | 57.5670 | 62.2369 | 23968 | 6510 | 51344 | 37846 | 29268 | 77.3345 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 46.7074 | 0.0000 | 0.0000 | 7802 | 8902 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 42.4269 | 27.3328 | 94.7531 | 66.0231 | 4965 | 13200 | 5219 | 289 | 255 | 88.2353 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 1.5317 | 0.7843 | 32.5163 | 68.9024 | 12 | 1518 | 199 | 413 | 192 | 46.4891 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 3.4141 | 1.8018 | 32.4590 | 68.7660 | 12 | 654 | 198 | 412 | 191 | 46.3592 | |