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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 300 301 302 303 304 305 306 307 308 ... 1720 1721 » 15151-15200 / 86044 show all
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.4450	95.2959	99.6933	71.1249	628	31	650	2	2	100.0000
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.9267	100.0000	94.0367	91.2309	205	0	205	13	11	84.6154
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.4673	97.4995	99.4544	67.8523	15675	402	15676	86	70	81.3953
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0909	98.7850	99.3987	76.0252	6342	78	6282	38	24	63.1579
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3638	94.8948	99.9647	39.6673	5595	301	5656	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0855	99.3885	98.7844	71.5296	3738	23	3738	46	44	95.6522
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.4591	99.4895	99.4288	67.6195	30984	159	30984	178	19	10.6742
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.2708	99.4280	99.1141	69.5332	19467	112	19467	174	16	9.1954
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	100.0000	100.0000	100.0000	84.4156	12	0	12	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7788	99.5931	99.9652	63.6860	11505	47	11505	4	3	75.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	96.5454	94.9673	98.1769	85.0222	1453	77	1454	27	18	66.6667
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.6974	95.4955	97.9299	88.5024	636	30	615	13	5	38.4615
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.3190	93.1715	99.6865	67.9236	614	45	636	2	2	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.6667	99.0244	94.4186	91.1777	203	2	203	12	11	91.6667
ckim-vqsr	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*		0.0000	0.0000	0.0000	0	1	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het		0.0000	0.0000	0.0000	0	1	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.3373	95.6976	99.0342	63.1411	6050	272	6050	59	49	83.0508
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5099	97.8184	99.2114	76.2576	1928	43	1887	15	6	40.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.6029	93.5337	99.8803	39.4384	3298	228	3339	4	4	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.5725	99.8788	95.3704	71.6070	824	1	824	40	39	97.5000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.4920	97.0234	97.9652	58.1135	17145	526	17140	356	338	94.9438
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.8690	98.8710	96.8872	72.0428	5780	66	5727	184	169	91.8478
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.8550	94.3417	99.5058	29.2966	7603	456	7651	38	38	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.1989	99.8938	96.5606	60.0492	3762	4	3762	134	131	97.7612
ckim-vqsr	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.2658	97.2995	97.2323	75.7006	4864	135	4848	138	105	76.0870
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.5189	98.9555	94.1994	86.2906	1800	19	1559	96	69	71.8750
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.7195	94.2517	99.3201	38.1124	1820	111	2045	14	14	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6910	99.5997	97.7987	75.1563	1244	5	1244	28	22	78.5714
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.3646	97.7617	98.9750	61.5381	30705	703	30705	318	294	92.4528
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0685	99.1132	99.0238	69.1438	13635	122	13593	134	112	83.5821
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.6665	93.9188	99.5798	30.8815	8726	565	8768	37	37	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0327	99.8086	98.2688	63.7648	8344	16	8344	147	145	98.6395
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.0024	96.5790	99.4683	68.2096	15527	550	15528	83	69	83.1325
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0199	98.6449	99.3978	76.9388	6333	87	6272	38	24	63.1579
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1530	92.6221	99.9638	35.0611	5461	435	5523	2	2	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.0580	99.2555	98.8612	71.4717	3733	28	3733	43	43	100.0000
dgrover-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*		0.0000	0.0000	0.0000	0	1	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het		0.0000	0.0000	0.0000	0	1	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.9367	98.4377	99.4408	75.9589	44988	714	44988	253	34	13.4387
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.9180	98.7044	99.1325	79.1132	28340	372	28340	248	29	11.6935
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	100.0000	100.0000	100.0000	94.2529	15	0	15	0	0
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.9677	97.9853	99.9699	67.4084	16633	342	16633	5	5	100.0000

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