PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15051-15100 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 80.2083 | 71.8944 | 90.6965 | 69.6512 | 3594 | 1405 | 3646 | 374 | 325 | 86.8984 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.0530 | 88.5102 | 85.6431 | 75.6731 | 1610 | 209 | 1718 | 288 | 261 | 90.6250 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 59.9599 | 42.9829 | 99.1026 | 48.8525 | 830 | 1101 | 773 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 92.9921 | 92.3939 | 93.5981 | 64.4892 | 1154 | 95 | 1155 | 79 | 58 | 73.4177 | |
| egarrison-hhga | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| egarrison-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 80.0812 | 74.2799 | 86.8654 | 57.3222 | 13126 | 4545 | 13260 | 2005 | 1766 | 88.0798 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.5434 | 96.4420 | 78.4876 | 62.7159 | 5638 | 208 | 6217 | 1704 | 1642 | 96.3615 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 64.3918 | 47.8099 | 98.5834 | 40.4750 | 3853 | 4206 | 3410 | 49 | 42 | 85.7143 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.9937 | 96.5215 | 93.5135 | 55.4063 | 3635 | 131 | 3633 | 252 | 82 | 32.5397 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.1491 | 90.4125 | 98.2078 | 67.8829 | 13174 | 1397 | 13261 | 242 | 122 | 50.4132 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0520 | 90.0033 | 98.4822 | 69.9861 | 8220 | 913 | 8305 | 128 | 13 | 10.1562 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.8889 | 80.0000 | 100.0000 | 79.6610 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 71.7619 | 59.4118 | 90.5941 | 73.3930 | 909 | 621 | 915 | 95 | 49 | 51.5789 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.5265 | 61.2613 | 85.9244 | 78.5005 | 408 | 258 | 409 | 67 | 27 | 40.2985 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 68.7152 | 52.6555 | 98.8701 | 55.1331 | 347 | 312 | 350 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.4824 | 75.1220 | 86.6667 | 77.3014 | 154 | 51 | 156 | 24 | 18 | 75.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.4491 | 90.7138 | 98.5051 | 60.8883 | 28251 | 2892 | 28401 | 431 | 172 | 39.9072 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.2933 | 90.4234 | 98.5092 | 63.1853 | 17704 | 1875 | 17841 | 270 | 18 | 6.6667 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 85.7143 | 75.0000 | 100.0000 | 76.9231 | 9 | 3 | 9 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.3063 | 91.2223 | 99.7730 | 55.8289 | 10538 | 1014 | 10551 | 24 | 18 | 75.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 89.4795 | 84.4436 | 95.1541 | 60.5296 | 13576 | 2501 | 13588 | 692 | 434 | 62.7168 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.1406 | 89.3302 | 90.9658 | 70.1878 | 5735 | 685 | 5689 | 565 | 335 | 59.2920 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 89.7782 | 82.5984 | 98.3250 | 32.1288 | 4870 | 1026 | 4931 | 84 | 71 | 84.5238 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 87.7042 | 78.9949 | 98.5719 | 61.4567 | 2971 | 790 | 2968 | 43 | 28 | 65.1163 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.0986 | 72.9041 | 93.9468 | 53.8786 | 4609 | 1713 | 4625 | 298 | 190 | 63.7584 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.8319 | 77.0675 | 87.2242 | 66.9862 | 1519 | 452 | 1502 | 220 | 128 | 58.1818 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 81.7466 | 69.7674 | 98.6920 | 34.2284 | 2460 | 1066 | 2490 | 33 | 24 | 72.7273 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 84.0119 | 76.3636 | 93.3628 | 58.1998 | 630 | 195 | 633 | 45 | 38 | 84.4444 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.3555 | 90.6219 | 98.4100 | 63.4241 | 41416 | 4286 | 41653 | 673 | 294 | 43.6850 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.2166 | 90.2898 | 98.5006 | 65.6575 | 25924 | 2788 | 26146 | 398 | 31 | 7.7889 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.8889 | 80.0000 | 100.0000 | 79.6610 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2997 | 91.1929 | 99.7939 | 58.4384 | 15480 | 1495 | 15495 | 32 | 23 | 71.8750 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0302 | 97.5303 | 98.5353 | 67.8515 | 63737 | 1614 | 63506 | 944 | 836 | 88.5593 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5995 | 98.7927 | 98.4071 | 74.5792 | 30112 | 368 | 29653 | 480 | 385 | 80.2083 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1302 | 92.8764 | 99.6203 | 36.5800 | 15515 | 1190 | 15743 | 60 | 60 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7459 | 99.6917 | 97.8179 | 67.5313 | 18110 | 56 | 18110 | 404 | 391 | 96.7822 | |