PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1401-1450 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | tv | * | * | 99.3067 | 99.4773 | 99.1367 | 27.6192 | 964620 | 5069 | 964862 | 8402 | 1363 | 16.2223 | |
| jpowers-varprowl | SNP | tv | * | het | 99.1037 | 99.3176 | 98.8908 | 29.6901 | 587657 | 4038 | 587824 | 6593 | 166 | 2.5178 | |
| jpowers-varprowl | SNP | tv | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 871 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | * | homalt | 99.7396 | 99.9576 | 99.5225 | 24.1122 | 376963 | 160 | 377038 | 1809 | 1197 | 66.1692 | |
| ltrigg-rtg1 | INDEL | * | * | * | 99.0160 | 98.3355 | 99.7061 | 56.0561 | 338806 | 5735 | 338554 | 998 | 454 | 45.4910 | |
| ltrigg-rtg1 | INDEL | * | * | het | 99.1142 | 98.5886 | 99.6455 | 55.1307 | 191393 | 2740 | 190584 | 678 | 162 | 23.8938 | |
| ltrigg-rtg1 | INDEL | * | * | hetalt | 95.1862 | 91.1955 | 99.5422 | 68.0582 | 23015 | 2222 | 23702 | 109 | 107 | 98.1651 | |
| ltrigg-rtg1 | INDEL | * | * | homalt | 99.6060 | 99.3824 | 99.8305 | 54.1259 | 124398 | 773 | 124268 | 211 | 185 | 87.6777 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 93.1507 | 95.5569 | 0 | 0 | 68 | 5 | 4 | 80.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 88.0000 | 96.2853 | 0 | 0 | 22 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 96.5517 | 94.6593 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 94.7368 | 95.5504 | 0 | 0 | 18 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | * | * | 92.5185 | 90.0000 | 95.1819 | 96.3145 | 9 | 1 | 968 | 49 | 5 | 10.2041 | |
| ltrigg-rtg1 | INDEL | C1_5 | * | het | 89.8401 | 88.8889 | 90.8120 | 96.3931 | 8 | 1 | 425 | 43 | 1 | 2.3256 | |
| ltrigg-rtg1 | INDEL | C1_5 | * | hetalt | 99.4371 | 100.0000 | 98.8806 | 95.8674 | 1 | 0 | 265 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 98.9324 | 96.5458 | 0 | 0 | 278 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | * | 98.9362 | 100.0000 | 97.8947 | 93.9625 | 7 | 0 | 372 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | het | 98.8701 | 100.0000 | 97.7654 | 93.0539 | 7 | 0 | 175 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 97.9452 | 93.5654 | 0 | 0 | 143 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 98.1818 | 96.2017 | 0 | 0 | 54 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | * | 96.8429 | 94.6197 | 99.1732 | 57.6142 | 6419 | 365 | 6357 | 53 | 36 | 67.9245 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | het | 97.4370 | 95.9481 | 98.9728 | 64.1950 | 3031 | 128 | 2987 | 31 | 14 | 45.1613 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | hetalt | 94.7356 | 90.7915 | 99.0379 | 41.7792 | 1755 | 178 | 1750 | 17 | 17 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | homalt | 98.0769 | 96.5130 | 99.6923 | 55.5890 | 1633 | 59 | 1620 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | * | * | 99.2818 | 98.7945 | 99.7740 | 55.6693 | 144976 | 1769 | 144802 | 328 | 127 | 38.7195 | |
| ltrigg-rtg1 | INDEL | D1_5 | * | het | 99.2847 | 98.8627 | 99.7103 | 52.7629 | 86578 | 996 | 86378 | 251 | 52 | 20.7171 | |
| ltrigg-rtg1 | INDEL | D1_5 | * | hetalt | 96.8514 | 94.4363 | 99.3932 | 69.7439 | 9675 | 570 | 9828 | 60 | 59 | 98.3333 | |
| ltrigg-rtg1 | INDEL | D1_5 | * | homalt | 99.7747 | 99.5851 | 99.9650 | 56.3253 | 48723 | 203 | 48596 | 17 | 16 | 94.1176 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | * | 98.2810 | 97.0642 | 99.5288 | 47.5098 | 25326 | 766 | 25133 | 119 | 76 | 63.8655 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | het | 99.1571 | 98.8268 | 99.4897 | 52.9280 | 11456 | 136 | 11308 | 58 | 18 | 31.0345 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | hetalt | 96.1547 | 93.1490 | 99.3609 | 40.3300 | 7614 | 560 | 7618 | 49 | 49 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | homalt | 99.3481 | 98.8935 | 99.8070 | 44.0385 | 6256 | 70 | 6207 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | * | 90.7186 | 84.0050 | 98.5984 | 48.4241 | 5357 | 1020 | 5276 | 75 | 66 | 88.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | het | 92.1773 | 85.9088 | 99.4326 | 48.0027 | 2335 | 383 | 2278 | 13 | 5 | 38.4615 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | hetalt | 85.7294 | 75.3098 | 99.4953 | 51.3953 | 1580 | 518 | 1577 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | homalt | 94.3162 | 92.3767 | 96.3390 | 45.5318 | 1442 | 119 | 1421 | 54 | 53 | 98.1481 | |
| ltrigg-rtg1 | INDEL | I1_5 | * | * | 99.3139 | 98.8385 | 99.7940 | 55.2555 | 148913 | 1750 | 148225 | 306 | 127 | 41.5033 | |
| ltrigg-rtg1 | INDEL | I1_5 | * | het | 99.3128 | 98.9158 | 99.7130 | 54.8506 | 78184 | 857 | 77471 | 223 | 56 | 25.1121 | |
| ltrigg-rtg1 | INDEL | I1_5 | * | hetalt | 96.8345 | 94.0598 | 99.7778 | 71.7595 | 10530 | 665 | 10776 | 24 | 24 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | * | homalt | 99.7620 | 99.6227 | 99.9017 | 50.6392 | 60199 | 228 | 59978 | 59 | 47 | 79.6610 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | * | 97.4037 | 95.4115 | 99.4808 | 44.5038 | 23684 | 1139 | 23374 | 122 | 76 | 62.2951 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | het | 98.5293 | 97.6179 | 99.4579 | 45.4535 | 9794 | 239 | 9540 | 52 | 14 | 26.9231 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | hetalt | 94.9898 | 90.5742 | 99.8580 | 43.9696 | 7745 | 806 | 7738 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | homalt | 98.7666 | 98.4933 | 99.0414 | 43.6510 | 6145 | 94 | 6096 | 59 | 52 | 88.1356 | |
| ltrigg-rtg1 | SNP | * | * | * | 99.8754 | 99.8921 | 99.8587 | 17.5113 | 3051330 | 3296 | 3051518 | 4317 | 267 | 6.1849 | |
| ltrigg-rtg1 | SNP | * | * | het | 99.8185 | 99.8570 | 99.7799 | 17.5567 | 1870919 | 2679 | 1871167 | 4127 | 102 | 2.4715 | |
| ltrigg-rtg1 | SNP | * | * | hetalt | 99.2007 | 99.6556 | 98.7500 | 40.5405 | 868 | 3 | 869 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | * | homalt | 99.9664 | 99.9480 | 99.9848 | 17.4153 | 1179543 | 614 | 1179482 | 179 | 154 | 86.0335 | |
| ltrigg-rtg1 | SNP | ti | * | * | 99.8970 | 99.8948 | 99.8992 | 16.3223 | 2083318 | 2194 | 2083241 | 2102 | 174 | 8.2778 | |
| ltrigg-rtg1 | SNP | ti | * | het | 99.8539 | 99.8618 | 99.8460 | 16.3632 | 1280123 | 1771 | 1280140 | 1975 | 52 | 2.6329 | |