PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14201-14250 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.2598 | 94.5285 | 96.0025 | 68.9889 | 29439 | 1704 | 29443 | 1226 | 756 | 61.6639 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.8405 | 91.9659 | 97.9006 | 68.3752 | 18006 | 1573 | 18000 | 386 | 15 | 3.8860 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6522 | 91.6667 | 100.0000 | 81.6667 | 11 | 1 | 11 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.9297 | 98.8747 | 93.1551 | 69.8469 | 11422 | 130 | 11432 | 840 | 741 | 88.2143 | |
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.6481 | 99.5697 | 99.7266 | 69.7354 | 31009 | 134 | 31007 | 85 | 34 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.5554 | 99.5199 | 99.5910 | 69.5435 | 19485 | 94 | 19481 | 80 | 32 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9774 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8049 | 99.6537 | 99.9566 | 69.9831 | 11512 | 40 | 11514 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.5504 | 99.5402 | 99.5606 | 75.8969 | 14504 | 67 | 14502 | 64 | 17 | 26.5625 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.4197 | 99.4416 | 99.3979 | 75.9193 | 9082 | 51 | 9080 | 55 | 15 | 27.2727 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.2280 | 15 | 0 | 15 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7694 | 99.7050 | 99.8338 | 75.7174 | 5407 | 16 | 5407 | 9 | 2 | 22.2222 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.6169 | 99.5602 | 99.6736 | 72.0020 | 45501 | 201 | 45497 | 149 | 51 | 34.2282 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.5123 | 99.4950 | 99.5296 | 71.9110 | 28567 | 145 | 28561 | 135 | 47 | 34.8148 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.2280 | 15 | 0 | 15 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7936 | 99.6701 | 99.9173 | 72.0908 | 16919 | 56 | 16921 | 14 | 4 | 28.5714 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.9269 | 85.8170 | 96.6839 | 77.1395 | 1313 | 217 | 1312 | 45 | 41 | 91.1111 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.6947 | 87.3874 | 94.2623 | 81.0323 | 582 | 84 | 575 | 35 | 32 | 91.4286 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.8516 | 83.6115 | 99.4643 | 62.4413 | 551 | 108 | 557 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.5656 | 91.5183 | 93.6371 | 69.0667 | 4575 | 424 | 4562 | 310 | 290 | 93.5484 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.1124 | 96.0968 | 84.8297 | 79.1299 | 1748 | 71 | 1644 | 294 | 276 | 93.8776 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.5141 | 83.1176 | 99.3556 | 34.2956 | 1605 | 326 | 1696 | 11 | 11 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7076 | 97.8383 | 99.5925 | 68.2618 | 1222 | 27 | 1222 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.3294 | 95.6482 | 97.0203 | 55.0608 | 16902 | 769 | 16899 | 519 | 497 | 95.7611 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.3424 | 98.3065 | 92.5518 | 69.4000 | 5747 | 99 | 5716 | 460 | 444 | 96.5217 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.9446 | 92.7410 | 99.3774 | 27.6985 | 7474 | 585 | 7502 | 47 | 46 | 97.8723 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6996 | 97.7430 | 99.6751 | 54.6036 | 3681 | 85 | 3681 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 93.9710 | 90.6042 | 97.5975 | 61.3424 | 5728 | 594 | 5728 | 141 | 133 | 94.3262 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0812 | 94.2669 | 93.8962 | 73.0279 | 1858 | 113 | 1846 | 120 | 112 | 93.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 93.6827 | 88.3154 | 99.7447 | 41.6713 | 3114 | 412 | 3126 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.8557 | 91.6364 | 98.3095 | 69.4841 | 756 | 69 | 756 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7633 | 97.2714 | 98.2602 | 58.6360 | 30551 | 857 | 30554 | 541 | 494 | 91.3124 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8086 | 98.8224 | 96.8153 | 66.1962 | 13595 | 162 | 13589 | 447 | 406 | 90.8277 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6089 | 93.9727 | 99.3973 | 31.2378 | 8731 | 560 | 8741 | 53 | 52 | 98.1132 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1133 | 95.7268 | 98.5406 | 67.8499 | 15390 | 687 | 15395 | 228 | 206 | 90.3509 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4118 | 97.6791 | 97.1460 | 75.4876 | 6271 | 149 | 6263 | 184 | 164 | 89.1304 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.9920 | 92.6052 | 99.6360 | 39.6618 | 5460 | 436 | 5475 | 20 | 20 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.3072 | 97.2880 | 99.3480 | 72.0840 | 3659 | 102 | 3657 | 24 | 22 | 91.6667 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8254 | 98.0798 | 97.5723 | 79.1147 | 30545 | 598 | 30586 | 761 | 104 | 13.6662 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2458 | 97.9315 | 96.5697 | 82.2940 | 19174 | 405 | 19284 | 685 | 59 | 8.6131 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5318 | 12 | 0 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8278 | 98.3293 | 99.3313 | 69.2512 | 11359 | 193 | 11290 | 76 | 45 | 59.2105 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 88.1261 | 88.9650 | 87.3028 | 53.9810 | 15721 | 1950 | 17045 | 2479 | 1231 | 49.6571 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.5625 | 95.5867 | 86.0400 | 54.3416 | 5588 | 258 | 13473 | 2186 | 990 | 45.2882 | |