PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13951-14000 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 83.8710 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8762 | 99.8119 | 99.9405 | 50.3909 | 10083 | 19 | 10083 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8590 | 99.8446 | 99.8734 | 64.1005 | 27635 | 43 | 27622 | 35 | 19 | 54.2857 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.8491 | 99.8406 | 99.8576 | 65.2848 | 17540 | 28 | 17527 | 25 | 17 | 68.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.2500 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8811 | 99.8613 | 99.9009 | 61.7921 | 10083 | 14 | 10083 | 10 | 2 | 20.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6413 | 97.9883 | 99.3029 | 72.0487 | 92549 | 1900 | 92457 | 649 | 588 | 90.6009 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.6423 | 98.0278 | 99.2646 | 73.6782 | 47319 | 952 | 47111 | 349 | 293 | 83.9542 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.8972 | 93.9872 | 99.9932 | 58.6098 | 14490 | 927 | 14606 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4822 | 99.9317 | 99.0367 | 73.5845 | 30740 | 21 | 30740 | 299 | 294 | 98.3278 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0366 | 99.3834 | 98.6923 | 64.9734 | 55288 | 343 | 55243 | 732 | 105 | 14.3443 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7057 | 99.2433 | 98.1739 | 67.8653 | 35151 | 268 | 35268 | 656 | 60 | 9.1463 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6297 | 99.6336 | 99.6257 | 58.2037 | 20125 | 74 | 19963 | 75 | 44 | 58.6667 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 90.4147 | 91.9985 | 88.8845 | 55.6709 | 14763 | 1284 | 15793 | 1975 | 866 | 43.8481 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 92.1962 | 96.6768 | 88.1125 | 56.1680 | 5411 | 186 | 12282 | 1657 | 662 | 39.9517 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.6723 | 100.0000 | 5836 | 976 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 94.1056 | 96.6465 | 91.6950 | 53.7560 | 3516 | 122 | 3511 | 318 | 204 | 64.1509 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.7408 | 91.6287 | 98.0717 | 68.7918 | 14273 | 1304 | 54062 | 1063 | 839 | 78.9276 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.6451 | 97.4107 | 97.8807 | 69.5745 | 5944 | 158 | 34593 | 749 | 587 | 78.3712 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 89.6938 | 81.4584 | 99.7817 | 61.4370 | 4837 | 1101 | 2742 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.4591 | 98.7277 | 98.1920 | 68.0700 | 3492 | 45 | 16727 | 308 | 247 | 80.1948 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 87.8199 | 86.2627 | 89.4344 | 51.7765 | 4584 | 730 | 11495 | 1358 | 772 | 56.8483 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 91.6770 | 95.2628 | 88.3513 | 55.6869 | 1468 | 73 | 6227 | 821 | 401 | 48.8429 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 88.2413 | 79.4231 | 99.2621 | 38.3627 | 2478 | 642 | 3094 | 23 | 17 | 73.9130 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 88.4979 | 97.7029 | 80.8780 | 52.7675 | 638 | 15 | 2174 | 514 | 354 | 68.8716 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9643 | 99.4833 | 98.4507 | 67.9503 | 27535 | 143 | 27515 | 433 | 39 | 9.0069 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5348 | 99.3169 | 97.7649 | 70.3556 | 17448 | 120 | 17496 | 400 | 17 | 4.2500 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7317 | 99.7821 | 99.6812 | 62.4851 | 10075 | 22 | 10007 | 32 | 21 | 65.6250 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 79.7708 | 76.3365 | 83.5286 | 61.7313 | 871 | 270 | 2282 | 450 | 243 | 54.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.1236 | 82.5688 | 83.6858 | 64.5989 | 360 | 76 | 1108 | 216 | 72 | 33.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.2499 | 68.0961 | 97.6847 | 47.3287 | 397 | 186 | 886 | 21 | 17 | 80.9524 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 71.1805 | 93.4426 | 57.4850 | 70.1252 | 114 | 8 | 288 | 213 | 154 | 72.3005 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0978 | 99.2811 | 98.9152 | 61.5160 | 27758 | 201 | 27902 | 306 | 67 | 21.8954 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8622 | 99.1709 | 98.5554 | 65.0606 | 17703 | 148 | 17874 | 262 | 43 | 16.4122 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 85.7143 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5290 | 99.4853 | 99.5728 | 52.8503 | 10050 | 52 | 10023 | 43 | 23 | 53.4884 | |
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1160 | 97.8900 | 98.3429 | 64.4756 | 27094 | 584 | 27122 | 457 | 344 | 75.2735 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2029 | 96.8864 | 99.5557 | 62.5968 | 17021 | 547 | 17030 | 76 | 4 | 5.2632 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7857 | 13 | 0 | 13 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.9682 | 99.6336 | 96.3576 | 67.1524 | 10060 | 37 | 10079 | 381 | 340 | 89.2388 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.2288 | 92.7559 | 93.7066 | 80.9569 | 87607 | 6842 | 88251 | 5927 | 5106 | 86.1481 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.2017 | 97.6736 | 90.9681 | 70.0370 | 47148 | 1123 | 48456 | 4811 | 4484 | 93.2031 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 79.7416 | 66.9975 | 98.4728 | 66.8746 | 10329 | 5088 | 9672 | 150 | 125 | 83.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.4179 | 97.9487 | 96.8928 | 71.1401 | 30130 | 631 | 30123 | 966 | 497 | 51.4493 | |