PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13901-13950 / 86044 show all
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.1113
93.6897
96.5766
79.4254
10697210723821
55.2632
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.3225
94.9541
95.6938
84.8606
41422400184
22.2222
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
95.3650
91.5952
99.4585
65.4829
5344955132
66.6667
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
93.0769
99.1803
87.6812
86.5889
12111211715
88.2353
jlack-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.9317
95.4084
98.5046
64.3470
507024450727769
89.6104
jlack-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.3261
97.7936
98.8644
77.1834
15073414801711
64.7059
jlack-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.5213
93.3654
99.8981
44.6324
2913207294233
100.0000
jlack-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.5882
99.5406
91.9378
72.4044
65036505755
96.4912
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1076
98.6776
99.5414
71.9967
93200124993118429358
83.4499
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3482
99.1423
99.5550
73.6647
4785741447648213149
69.9531
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1334
94.7850
99.6011
59.6178
14613804147335958
98.3051
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6951
99.8992
99.4918
73.2959
307303130737157151
96.1783
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9991
96.8351
99.1915
73.1225
150844931509112394
76.4228
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1869
99.2134
99.1605
78.4314
60544860245124
47.0588
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.1311
92.6743
99.8558
64.0650
5503435554087
87.5000
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9618
99.7173
98.2178
72.3769
35271035276463
98.4375
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9413
99.8121
98.0856
65.0500
27626522761653926
4.8238
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4079
99.8008
97.0534
66.9969
17533351752353219
3.5714
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.3077
92.3077
92.3077
81.4286
1211211
100.0000
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8910
99.8415
99.9405
60.8743
10081161008166
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.3322
93.7096
94.9630
67.1681
33372243337177170
96.0452
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
92.7175
97.4908
88.3898
77.5276
1321341279168162
96.4286
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.3110
86.1669
99.3986
32.5999
1115179115777
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.2837
98.7939
99.7785
64.4068
9011190121
50.0000
rpoplin-dv42INDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
91.5223
87.0289
96.5049
73.3713
9931489943634
94.4444
rpoplin-dv42INDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
91.6035
89.2202
94.1176
80.0098
389473842422
91.6667
rpoplin-dv42INDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
91.0987
84.2196
99.2016
58.5608
4919249744
100.0000
rpoplin-dv42INDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
93.0041
92.6230
93.3884
80.4207
113911388
100.0000
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.4805
97.1646
97.7985
57.9258
1559245515593351340
96.8661
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.8135
98.9459
94.7711
71.2462
5538595528305297
97.3770
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1408
94.9941
99.3867
29.3238
647134164824039
97.5000
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.1559
98.4882
99.8328
57.1769
358355358364
66.6667
rpoplin-dv42SNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8633
99.8472
99.8795
59.6020
5554685555306738
56.7164
rpoplin-dv42SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8560
99.8560
99.8559
61.0125
3536851353525131
60.7843
rpoplin-dv42SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
81.2500
1211200
rpoplin-dv42SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8787
99.8366
99.9207
56.8327
201663320166167
43.7500
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0945
98.9337
99.2558
72.1244
6374468763755478442
92.4686
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2133
99.5848
98.8446
73.6714
3309813833109387353
91.2145
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3822
95.4389
99.4064
62.1615
887242488755352
98.1132
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6271
99.4292
99.8258
72.6049
21774125217713837
97.3684
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9893
96.9635
99.0370
71.9042
1510447315118147133
90.4762
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.3984
98.6070
98.1907
77.5143
6017856024111100
90.0901
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.9646
94.4089
99.6626
61.7069
560633256121918
94.7368
rpoplin-dv42INDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9624
98.4167
99.5141
71.6519
34815634821715
88.2353
rpoplin-dv42INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.1465
92.0399
98.4702
62.7698
489142348927670
92.1053
rpoplin-dv42INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.7880
95.3926
96.1867
75.7339
14707114635853
91.3793
rpoplin-dv42INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
94.4711
89.8077
99.6454
42.6596
28023182810109
90.0000
rpoplin-dv42INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.7187
94.7933
98.7241
70.9453
6193461988
100.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8658
99.8462
99.8855
53.8968
2791643279133219
59.3750
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8628
99.8712
99.8543
55.6453
1782823178252614
53.8462