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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 272 273 274 275 276 277 278 279 280 ... 1720 1721 » 13751-13800 / 86044 show all
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.8359	92.4591	99.4688	63.5748	8595	701	8613	46	42	91.3043
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4496	99.8356	99.0666	73.6565	21863	36	21863	206	205	99.5146
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.3660	98.2626	98.4696	72.6251	92808	1641	92717	1441	1058	73.4212
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.6377	99.1486	98.1322	75.2542	47860	411	47652	907	540	59.5369
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.9102	92.5212	99.5569	59.5559	14264	1153	14381	64	58	90.6250
jlack-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1165	99.7497	98.4914	72.1867	30684	77	30684	470	460	97.8723
jlack-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.6125	96.9110	96.3159	71.1607	3451	110	3451	132	77	58.3333
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	94.5666	98.2288	91.1677	82.1653	1331	24	1218	118	65	55.0847
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.7688	94.2040	99.4772	35.3452	1219	75	1332	7	7	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.0110	98.7939	99.2291	68.2739	901	11	901	7	5	71.4286
hfeng-pmm2	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.8008	96.2364	99.4170	63.5191	5114	200	5116	30	22	73.3333
hfeng-pmm2	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.0224	96.8202	99.2547	76.2357	1492	49	1465	11	4	36.3636
hfeng-pmm2	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.5211	95.1923	99.9667	45.0549	2970	150	2999	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.5639	99.8469	97.3134	72.4846	652	1	652	18	17	94.4444
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.1803	98.5845	99.7833	71.8915	63519	912	63530	138	117	84.7826
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1951	98.6340	99.7626	72.6726	32782	454	32775	78	58	74.3590
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7343	95.5895	99.9775	64.8179	8886	410	8904	2	1	50.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7580	99.7808	99.7353	72.9432	21851	48	21851	58	58	100.0000
hfeng-pmm2	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	66.6667	0.0000	0.0000	2	1	0	0	0
hfeng-pmm2	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	66.6667	0.0000	0.0000	2	1	0	0	0
hfeng-pmm2	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	97.8162	96.8548	98.7969	68.2925	3449	112	3449	42	28	66.6667
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	96.1875	95.5720	96.8111	79.9607	1295	60	1184	39	25	64.1026
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.0701	96.2133	100.0000	37.0181	1245	49	1356	0	0
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6711	99.6711	99.6711	66.8845	909	3	909	3	3	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	96.9792	95.6179	98.3798	79.2724	1091	50	1093	18	12	66.6667
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.5416	96.5596	98.5437	84.5866	421	15	406	6	0	0.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.7395	93.9966	99.6473	67.3951	548	35	565	2	2	100.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	96.0630	100.0000	92.4242	86.0759	122	0	122	10	10	100.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.7125	97.6953	99.7510	72.1894	15218	359	15225	38	29	76.3158
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1836	98.6234	99.7502	77.6187	6018	84	5989	15	7	46.6667
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.7089	95.5204	100.0000	63.1123	5672	266	5708	0	0
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5485	99.7455	99.3523	71.7771	3528	9	3528	23	22	95.6522
hfeng-pmm2	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
hfeng-pmm2	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
hfeng-pmm2	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.0378	96.8281	99.2780	56.6258	15538	509	15539	113	101	89.3805
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.1165	95.7477	98.5251	68.8562	5359	238	5344	80	71	88.7500
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	98.0017	96.1098	99.9695	34.1855	6547	265	6563	2	1	50.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4932	99.8351	99.1537	57.8723	3632	6	3632	31	29	93.5484
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4357	98.9449	99.9314	53.1567	27664	295	27664	19	7	36.8421
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1505	98.3978	99.9147	54.8907	17565	286	17565	15	4	26.6667
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.9091	83.3333	100.0000	88.0952	5	1	5	0	0
hfeng-pmm3	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9406	99.9208	99.9604	49.7187	10094	8	10094	4	3	75.0000

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