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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13351-13400 / 86044 show all
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
92.3077
0.0000
0.0000
121000
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8562
99.7624
99.9502
47.5635
201514820069107
70.0000
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1034
98.6295
99.5819
70.6519
6354888364304270244
90.3704
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1729
98.6761
99.6748
69.3950
3279644042603139118
84.8921
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
95.7078
0.0000
0.0000
8897399000
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5991
99.7991
99.4000
72.8360
218554421701131126
96.1832
cchapple-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.3332
97.2524
99.4383
69.4992
15149428152268678
90.6977
cchapple-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.7070
97.8532
99.5759
69.9799
5971131117415042
84.0000
cchapple-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
95.5035
0.0000
0.0000
5671267000
cchapple-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.0646
99.1518
98.9776
67.7712
35073034853636
100.0000
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9722
98.8576
99.0871
73.7310
93370107993240859756
88.0093
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5191
99.4821
99.5562
75.3624
4802125047785213116
54.4601
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2357
94.9731
99.6087
58.9389
14642775147635858
100.0000
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9650
99.8245
98.1202
75.4285
307075430692588582
98.9796
ciseli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.8947
97.3720
81.7754
63.9228
5416914625435212113797
6.5797
ciseli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.5234
96.3184
76.9043
63.8905
3411513043433710312215
2.0850
ciseli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
55.5556
76.9231
43.4783
70.8861
10310133
23.0769
ciseli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.3693
99.2326
91.7955
63.9797
20044155200051788579
32.3826
ciseli-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
17.4295
10.9553
42.6117
84.6357
1251016124167140
83.8323
ciseli-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
25.7093
16.0550
64.4860
89.9813
70366693823
60.5263
ciseli-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0583000
ciseli-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
35.9477
45.0820
29.8913
77.7240
556755129117
90.6977
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
25.1673
16.3154
55.0168
69.5072
8674447817668604
90.4192
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
44.5054
31.6677
74.8476
75.2826
4881053491165135
81.8182
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
1.6026
0.0000
0.0000
503070000
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
44.1721
50.3828
39.3245
62.5903
329324326503469
93.2406
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
89.4833
97.3914
82.7630
66.8151
26956722270135626378
6.7188
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.4138
96.3627
78.3270
66.2442
1692963917004470598
2.0829
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
55.5556
76.9231
43.4783
70.8861
10310133
23.0769
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.2928
99.2077
91.6751
67.8866
10017809999908277
30.5066
ciseli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
65.6393
56.0506
79.1857
70.3212
87316846848022291542
69.1790
ciseli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.1821
88.1350
82.4206
72.9298
537872454481162656
56.4544
ciseli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
4.9006
0.0000
0.0000
2915647000
ciseli-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
79.7753
86.5705
73.9693
64.8607
306247530321067886
83.0366
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.2783
97.3461
80.7559
60.7530
27217742274786548433
6.6127
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6682
96.2747
75.5590
61.4479
17186665174025629124
2.2029
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
44.4444
66.6667
33.3333
73.9130
42483
37.5000
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.3321
99.2576
91.7054
59.1877
100277510072911306
33.5895
ckim-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6801
99.7532
99.6071
56.0538
27890692788911011
10.0000
ckim-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5862
99.7647
99.4083
59.0715
1780942178081067
6.6038
ckim-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
88.3721
51500
ckim-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8514
99.7426
99.9603
49.3467
10076261007644
100.0000
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2509
96.9956
99.5391
72.8687
15109468151177047
67.1429
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4251
99.4428
99.4073
78.7466
60683460383613
36.1111
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2182
92.7585
99.9459
61.2554
5508430554633
100.0000
ckim-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5071
99.8869
99.1302
72.7419
3533435333131
100.0000
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2889
98.3993
98.1788
72.3290
35045735046545
69.2308
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.9160
99.5572
96.3281
83.1889
1349612334730
63.8298
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8234
96.2133
99.4883
36.4312
124549136177
100.0000
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.2908
99.7807
98.8056
70.5939
9102910118
72.7273