PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13151-13200 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.7747 | 0.0000 | 0.0000 | 46 | 5892 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 84.2056 | 79.3893 | 89.6441 | 65.5967 | 2808 | 729 | 2796 | 323 | 253 | 78.3282 | |
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8391 | 98.7777 | 96.9182 | 66.3842 | 54951 | 680 | 55130 | 1753 | 575 | 32.8009 | |
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9005 | 98.1874 | 97.6153 | 68.2457 | 34777 | 642 | 34917 | 853 | 41 | 4.8066 | |
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.7629 | 99.8762 | 95.7372 | 62.6774 | 20174 | 25 | 20213 | 900 | 534 | 59.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6899 | 97.7438 | 99.6546 | 70.7311 | 92318 | 2131 | 92612 | 321 | 168 | 52.3364 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.7006 | 97.8372 | 99.5793 | 71.1392 | 47227 | 1044 | 47105 | 199 | 54 | 27.1357 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.9259 | 94.5255 | 99.4514 | 70.4506 | 14573 | 844 | 15046 | 83 | 82 | 98.7952 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5400 | 99.2100 | 99.8721 | 70.2148 | 30518 | 243 | 30461 | 39 | 32 | 82.0513 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 39.6215 | 29.5446 | 60.1302 | 69.5829 | 1570 | 3744 | 1570 | 1041 | 1015 | 97.5024 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 65.5149 | 76.6385 | 57.2111 | 69.3456 | 1181 | 360 | 1198 | 896 | 886 | 98.8839 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5449 | 0.0000 | 0.0000 | 17 | 3103 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.5897 | 56.9678 | 71.9536 | 70.5077 | 372 | 281 | 372 | 145 | 129 | 88.9655 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9092 | 98.7644 | 97.0687 | 69.5742 | 27336 | 342 | 27419 | 828 | 294 | 35.5072 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.9095 | 98.1671 | 97.6533 | 71.1033 | 17246 | 322 | 17311 | 416 | 17 | 4.0865 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.9694 | 99.9307 | 96.0837 | 66.5958 | 10090 | 7 | 10108 | 412 | 277 | 67.2330 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 92.8446 | 92.0624 | 93.6403 | 70.3210 | 86952 | 7497 | 86813 | 5896 | 5729 | 97.1676 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6687 | 95.2332 | 92.1549 | 68.7890 | 45970 | 2301 | 45789 | 3898 | 3775 | 96.8445 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.5569 | 70.6298 | 99.3305 | 60.9945 | 10889 | 4528 | 10979 | 74 | 74 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.8665 | 97.8284 | 93.9817 | 74.3916 | 30093 | 668 | 30045 | 1924 | 1880 | 97.7131 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.3739 | 97.4595 | 99.3056 | 60.7094 | 5179 | 135 | 5148 | 36 | 21 | 58.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2438 | 97.5990 | 98.8973 | 68.4428 | 1504 | 37 | 1435 | 16 | 3 | 18.7500 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3982 | 97.2756 | 99.5471 | 54.5040 | 3035 | 85 | 3077 | 14 | 13 | 92.8571 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.5345 | 98.0092 | 99.0654 | 64.3729 | 640 | 13 | 636 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4820 | 99.5452 | 99.4189 | 54.5520 | 55378 | 253 | 55428 | 324 | 26 | 8.0247 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3249 | 99.5483 | 99.1025 | 56.2469 | 35259 | 160 | 35334 | 320 | 23 | 7.1875 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 76.7857 | 12 | 1 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7618 | 99.5445 | 99.9801 | 51.1635 | 20107 | 92 | 20081 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.7873 | 98.1180 | 99.4657 | 52.4428 | 15745 | 302 | 15637 | 84 | 58 | 69.0476 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1175 | 98.9995 | 99.2358 | 63.1487 | 5541 | 56 | 5454 | 42 | 17 | 40.4762 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.3080 | 97.2255 | 99.4149 | 40.8780 | 6623 | 189 | 6627 | 39 | 39 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1689 | 98.4332 | 99.9157 | 48.1800 | 3581 | 57 | 3556 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9726 | 98.5812 | 99.3672 | 71.8268 | 15356 | 221 | 15545 | 99 | 39 | 39.3939 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8029 | 98.7545 | 98.8513 | 71.4513 | 6026 | 76 | 6024 | 70 | 13 | 18.5714 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.9113 | 98.1812 | 99.6524 | 74.7228 | 5830 | 108 | 6020 | 21 | 21 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3613 | 98.9539 | 99.7720 | 65.8757 | 3500 | 37 | 3501 | 8 | 5 | 62.5000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4910 | 99.5737 | 99.4084 | 59.3516 | 27560 | 118 | 27559 | 164 | 14 | 8.5366 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3248 | 99.5674 | 99.0833 | 60.5130 | 17492 | 76 | 17510 | 162 | 12 | 7.4074 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 76.7857 | 12 | 1 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7866 | 99.5939 | 99.9801 | 57.0879 | 10056 | 41 | 10036 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.3456 | 85.6266 | 97.8831 | 68.3472 | 977 | 164 | 971 | 21 | 20 | 95.2381 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 91.4566 | 84.8624 | 99.1620 | 69.5837 | 370 | 66 | 355 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9728 | 84.5626 | 98.4344 | 65.7965 | 493 | 90 | 503 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6496 | 93.4426 | 91.8699 | 73.4341 | 114 | 8 | 113 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4714 | 99.5136 | 99.4293 | 48.5634 | 27823 | 136 | 27875 | 160 | 12 | 7.5000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3250 | 99.5294 | 99.1213 | 51.0494 | 17767 | 84 | 17824 | 158 | 11 | 6.9620 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3529 | 5 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7370 | 99.4951 | 99.9801 | 43.3493 | 10051 | 51 | 10045 | 2 | 1 | 50.0000 | |