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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12851-12900 / 86044 show all
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.0986
1211200
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8415
99.9603
61.7282
10081161008144
100.0000
dgrover-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2214
97.1584
99.3078
64.5805
516315151653629
80.5556
dgrover-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0176
98.6372
99.4008
77.5553
152021149393
33.3333
dgrover-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8406
95.8333
99.9338
44.4975
2990130301922
100.0000
dgrover-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.1217
100.0000
96.3127
73.4013
65306532524
96.0000
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3985
99.2535
99.5440
74.5809
6395048163963293257
87.7133
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6271
99.6871
99.5672
75.3638
3313210433126144110
76.3889
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7887
96.0736
99.5661
64.7766
893136589503938
97.4359
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7221
99.9452
99.4999
76.1475
218871221887110109
99.0909
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9205
98.2346
99.6161
72.9579
15302275153095945
76.2712
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5152
99.4428
99.5877
78.3498
60683460392511
44.0000
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9387
96.0088
99.9477
63.4628
5701237573733
100.0000
dgrover-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5071
99.8869
99.1302
72.8167
3533435333131
100.0000
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.7696
99.8855
99.6539
55.1919
279273227926978
8.2474
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6673
99.8600
99.4754
57.8446
178262517825945
5.3192
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
88.3721
51500
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9554
99.9406
99.9703
49.4797
1009661009633
100.0000
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.4366
98.2863
98.5874
60.3465
1577227515773226212
93.8053
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.6403
99.3747
97.9167
72.3397
5562355546118106
89.8305
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.9811
96.5062
99.5018
33.8856
657423865913332
96.9697
dgrover-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9522
99.9450
97.9790
62.3287
3636236367574
98.6667
dgrover-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.3449
96.3190
98.3929
80.3302
10994211021816
88.8889
dgrover-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.6602
96.7890
98.5472
85.8707
4221440764
66.6667
dgrover-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.3738
95.1973
99.6522
66.4723
5552857322
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.0630
100.0000
92.4242
87.5000
12201221010
100.0000
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.6743
99.8742
99.4753
60.5238
55561705555029327
9.2150
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5314
99.8673
99.1977
62.4958
35372473536128620
6.9930
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.0986
1211200
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9282
99.8911
99.9653
56.4446
20177222017777
100.0000
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.8280
94.9712
98.7588
48.1636
26553140626734336168
50.0000
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.7656
94.6334
98.9961
51.3619
168939581705917313
7.5145
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
64.2857
51500
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6487
95.5751
99.8142
40.4145
965544796701811
61.1111
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
71.1731
58.4575
90.9582
67.0080
6674746746737
55.2239
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
73.6851
63.7615
87.2671
74.3426
2781582814115
36.5854
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
67.5729
51.2864
99.0164
50.3257
29928430233
100.0000
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
76.6782
73.7705
79.8246
69.7613
9032912319
82.6087
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.5147
94.2784
98.8597
54.0704
52448318352797609355
58.2923
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.5751
94.0794
99.2069
56.5853
3332220973364726928
10.4089
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
57.1429
1211200
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.1734
94.6284
99.8591
48.1340
191141085191382718
66.6667
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9460
98.5791
99.3156
73.7970
93107134293014641576
89.8596
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3731
99.4054
99.3408
76.0979
4798428747771317259
81.7035
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.3917
93.3580
99.6293
58.1709
143931024145135454
100.0000
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5126
99.8992
99.1290
74.4665
307303130730270263
97.4074