PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1151-1200 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | D16_PLUS | * | * | 97.6998 | 96.8013 | 98.6151 | 66.5273 | 6567 | 217 | 6551 | 92 | 69 | 75.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | * | het | 97.3472 | 97.4992 | 97.1956 | 74.5540 | 3080 | 79 | 2842 | 82 | 62 | 75.6098 | |
| hfeng-pmm3 | INDEL | D16_PLUS | * | hetalt | 96.6173 | 93.5851 | 99.8525 | 38.5313 | 1809 | 124 | 2031 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | * | homalt | 99.3781 | 99.1726 | 99.5846 | 66.6072 | 1678 | 14 | 1678 | 7 | 4 | 57.1429 | |
| hfeng-pmm3 | INDEL | D1_5 | * | * | 99.5137 | 99.1441 | 99.8861 | 56.7122 | 145489 | 1256 | 145542 | 166 | 109 | 65.6627 | |
| hfeng-pmm3 | INDEL | D1_5 | * | het | 99.5975 | 99.3183 | 99.8783 | 55.2507 | 86977 | 597 | 86982 | 106 | 53 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | * | hetalt | 96.9633 | 94.1240 | 99.9794 | 61.2573 | 9643 | 602 | 9686 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | * | homalt | 99.8825 | 99.8835 | 99.8815 | 58.1721 | 48869 | 57 | 48874 | 58 | 56 | 96.5517 | |
| hfeng-pmm3 | INDEL | D6_15 | * | * | 98.0738 | 96.8879 | 99.2891 | 51.0206 | 25280 | 812 | 25279 | 181 | 162 | 89.5028 | |
| hfeng-pmm3 | INDEL | D6_15 | * | het | 98.2130 | 97.5673 | 98.8673 | 58.6531 | 11310 | 282 | 11260 | 129 | 115 | 89.1473 | |
| hfeng-pmm3 | INDEL | D6_15 | * | hetalt | 96.8203 | 93.8708 | 99.9612 | 33.0763 | 7673 | 501 | 7722 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | * | homalt | 99.3845 | 99.5416 | 99.2279 | 50.7795 | 6297 | 29 | 6297 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | * | 97.6899 | 96.4874 | 98.9228 | 68.1825 | 6153 | 224 | 6153 | 67 | 53 | 79.1045 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | het | 98.6061 | 97.7557 | 99.4715 | 72.8336 | 2657 | 61 | 2635 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | hetalt | 96.0725 | 92.6597 | 99.7463 | 58.0281 | 1944 | 154 | 1966 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | homalt | 98.1968 | 99.4234 | 97.0000 | 68.6397 | 1552 | 9 | 1552 | 48 | 45 | 93.7500 | |
| hfeng-pmm3 | INDEL | I1_5 | * | * | 99.5494 | 99.2672 | 99.8332 | 56.8186 | 149560 | 1104 | 149606 | 250 | 187 | 74.8000 | |
| hfeng-pmm3 | INDEL | I1_5 | * | het | 99.7016 | 99.5433 | 99.8604 | 59.2337 | 78680 | 361 | 78661 | 110 | 51 | 46.3636 | |
| hfeng-pmm3 | INDEL | I1_5 | * | hetalt | 97.1290 | 94.4350 | 99.9812 | 61.2138 | 10572 | 623 | 10632 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | * | homalt | 99.7866 | 99.8014 | 99.7717 | 52.1729 | 60308 | 120 | 60313 | 138 | 134 | 97.1014 | |
| hfeng-pmm3 | INDEL | I6_15 | * | * | 97.8954 | 96.7812 | 99.0356 | 49.5509 | 24024 | 799 | 24029 | 234 | 222 | 94.8718 | |
| hfeng-pmm3 | INDEL | I6_15 | * | het | 98.8597 | 98.1362 | 99.5939 | 56.2294 | 9846 | 187 | 9811 | 40 | 29 | 72.5000 | |
| hfeng-pmm3 | INDEL | I6_15 | * | hetalt | 96.4340 | 93.1353 | 99.9750 | 38.6184 | 7964 | 587 | 8004 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | * | homalt | 98.2839 | 99.5993 | 97.0028 | 48.9358 | 6214 | 25 | 6214 | 192 | 191 | 99.4792 | |
| hfeng-pmm3 | SNP | * | * | * | 99.9548 | 99.9339 | 99.9756 | 18.3516 | 3052601 | 2018 | 3052460 | 744 | 76 | 10.2151 | |
| hfeng-pmm3 | SNP | * | * | het | 99.9317 | 99.8994 | 99.9639 | 18.5779 | 1871702 | 1885 | 1871578 | 675 | 30 | 4.4444 | |
| hfeng-pmm3 | SNP | * | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 46.7890 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | * | homalt | 99.9916 | 99.9889 | 99.9942 | 17.9575 | 1180030 | 131 | 1180013 | 68 | 45 | 66.1765 | |
| hfeng-pmm3 | SNP | ti | * | * | 99.9596 | 99.9417 | 99.9775 | 17.0194 | 2084295 | 1216 | 2084236 | 469 | 46 | 9.8081 | |
| hfeng-pmm3 | SNP | ti | * | het | 99.9388 | 99.9112 | 99.9664 | 17.2454 | 1280753 | 1138 | 1280703 | 430 | 18 | 4.1861 | |
| hfeng-pmm3 | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 45.8022 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | * | homalt | 99.9929 | 99.9905 | 99.9953 | 16.6242 | 802962 | 76 | 802953 | 38 | 27 | 71.0526 | |
| hfeng-pmm3 | SNP | tv | * | * | 99.9443 | 99.9171 | 99.9715 | 21.1004 | 968886 | 804 | 968804 | 276 | 31 | 11.2319 | |
| hfeng-pmm3 | SNP | tv | * | het | 99.9161 | 99.8738 | 99.9586 | 21.3235 | 590949 | 747 | 590875 | 245 | 12 | 4.8980 | |
| hfeng-pmm3 | SNP | tv | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 46.7890 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | * | homalt | 99.9887 | 99.9854 | 99.9920 | 20.6594 | 377068 | 55 | 377060 | 30 | 18 | 60.0000 | |
| jlack-gatk | INDEL | * | * | * | 98.6899 | 98.8138 | 98.5664 | 60.1151 | 340455 | 4087 | 340332 | 4950 | 2708 | 54.7071 | |
| jlack-gatk | INDEL | * | * | het | 98.8624 | 99.4076 | 98.3232 | 61.7242 | 192983 | 1150 | 192623 | 3285 | 1088 | 33.1202 | |
| jlack-gatk | INDEL | * | * | hetalt | 94.2358 | 89.4005 | 99.6240 | 58.0561 | 22562 | 2675 | 22786 | 86 | 78 | 90.6977 | |
| jlack-gatk | INDEL | * | * | homalt | 99.2685 | 99.7907 | 98.7518 | 57.7386 | 124910 | 262 | 124923 | 1579 | 1542 | 97.6567 | |