PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10051-10100 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2859 | 84.0580 | 99.8737 | 41.1152 | 754 | 143 | 791 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.3688 | 98.2332 | 92.6667 | 69.5122 | 278 | 5 | 278 | 22 | 22 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4170 | 92.5452 | 96.3660 | 61.9062 | 3687 | 297 | 3686 | 139 | 128 | 92.0863 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5292 | 96.8794 | 96.1816 | 74.8551 | 1366 | 44 | 1335 | 53 | 43 | 81.1321 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5782 | 86.5532 | 99.5046 | 32.0000 | 1577 | 245 | 1607 | 8 | 7 | 87.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.5362 | 98.9362 | 90.5109 | 61.6962 | 744 | 8 | 744 | 78 | 78 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9104 | 91.7791 | 94.0700 | 54.4828 | 3606 | 323 | 3601 | 227 | 215 | 94.7137 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.8572 | 96.8783 | 89.1566 | 74.3497 | 931 | 30 | 888 | 108 | 98 | 90.7407 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.2241 | 87.7430 | 99.4356 | 30.6136 | 2076 | 290 | 2114 | 12 | 11 | 91.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.5902 | 99.5017 | 84.8442 | 51.7430 | 599 | 3 | 599 | 107 | 106 | 99.0654 | |
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.3053 | 99.0106 | 99.6019 | 68.7862 | 1501 | 15 | 1501 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.9879 | 98.5887 | 99.3902 | 70.7665 | 978 | 14 | 978 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.9045 | 99.8092 | 100.0000 | 64.1043 | 523 | 1 | 523 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2848 | 99.0764 | 99.4941 | 66.4545 | 4720 | 44 | 4720 | 24 | 5 | 20.8333 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0536 | 98.9058 | 99.2019 | 69.0574 | 2983 | 33 | 2983 | 24 | 5 | 20.8333 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6844 | 99.3707 | 100.0000 | 60.6925 | 1737 | 11 | 1737 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2753 | 99.1071 | 99.4439 | 65.2571 | 3219 | 29 | 3219 | 18 | 4 | 22.2222 | |
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0857 | 99.0613 | 99.1102 | 68.1518 | 2005 | 19 | 2005 | 18 | 4 | 22.2222 | |
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5898 | 99.1830 | 100.0000 | 59.0142 | 1214 | 10 | 1214 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 64.8649 | 93.6097 | 0 | 0 | 24 | 13 | 3 | 23.0769 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 61.2903 | 93.6214 | 0 | 0 | 19 | 12 | 2 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 83.3333 | 93.5484 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 72.2222 | 96.5714 | 0 | 0 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 68.7500 | 96.2963 | 0 | 0 | 11 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.8495 | 0 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6951 | 91.3730 | 96.1384 | 58.0455 | 9204 | 869 | 12448 | 500 | 431 | 86.2000 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.5231 | 92.2277 | 96.9357 | 58.1370 | 3726 | 314 | 10281 | 325 | 271 | 83.3846 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.5063 | 0.0000 | 0.0000 | 3308 | 516 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.2958 | 98.2345 | 92.5278 | 57.6262 | 2170 | 39 | 2167 | 175 | 160 | 91.4286 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 98.0159 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.7011 | 0 | 0 | 0 | 4 | 3 | 75.0000 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 98.7179 | 0 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7733 | 90.0718 | 97.7922 | 67.5516 | 753 | 83 | 753 | 17 | 15 | 88.2353 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6396 | 95.5466 | 97.7578 | 80.8255 | 236 | 11 | 218 | 5 | 3 | 60.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.6223 | 86.4151 | 99.7904 | 48.0392 | 458 | 72 | 476 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.4729 | 100.0000 | 84.2857 | 76.0274 | 59 | 0 | 59 | 11 | 11 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.8400 | 87.9187 | 96.1276 | 66.5396 | 735 | 101 | 844 | 34 | 30 | 88.2353 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3618 | 90.6883 | 96.1977 | 79.5490 | 224 | 23 | 253 | 10 | 6 | 60.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7942 | 85.6604 | 98.8743 | 47.1754 | 454 | 76 | 527 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.3432 | 96.6102 | 78.0488 | 75.0760 | 57 | 2 | 64 | 18 | 18 | 100.0000 | |