PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51-100 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | * | hetalt | 0.0000 | 14.4661 | 0.0000 | 0.0000 | 126 | 745 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | * | homalt | 99.0679 | 98.8237 | 99.3132 | 19.4559 | 372687 | 4436 | 371341 | 2568 | 1960 | 76.3240 | |
| astatham-gatk | INDEL | * | * | * | 99.3424 | 99.2404 | 99.4446 | 59.9126 | 341925 | 2617 | 341788 | 1909 | 1550 | 81.1943 | |
| astatham-gatk | INDEL | * | * | het | 99.5127 | 99.4973 | 99.5281 | 60.7701 | 193157 | 976 | 192779 | 914 | 573 | 62.6915 | |
| astatham-gatk | INDEL | * | * | hetalt | 96.8001 | 94.0563 | 99.7088 | 58.1664 | 23737 | 1500 | 23968 | 70 | 69 | 98.5714 | |
| astatham-gatk | INDEL | * | * | homalt | 99.5755 | 99.8874 | 99.2657 | 58.8575 | 125031 | 141 | 125041 | 925 | 908 | 98.1622 | |
| astatham-gatk | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | * | * | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D16_PLUS | * | * | 97.8775 | 98.0100 | 97.7454 | 70.7802 | 6649 | 135 | 6633 | 153 | 104 | 67.9739 | |
| astatham-gatk | INDEL | D16_PLUS | * | het | 97.7337 | 99.3036 | 96.2126 | 78.4600 | 3137 | 22 | 2896 | 114 | 70 | 61.4035 | |
| astatham-gatk | INDEL | D16_PLUS | * | hetalt | 96.8051 | 94.4128 | 99.3217 | 38.8807 | 1825 | 108 | 2050 | 14 | 14 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | * | homalt | 99.1187 | 99.7045 | 98.5397 | 70.8497 | 1687 | 5 | 1687 | 25 | 20 | 80.0000 | |
| astatham-gatk | INDEL | D1_5 | * | * | 99.5682 | 99.4433 | 99.6934 | 60.4898 | 145928 | 817 | 145983 | 449 | 317 | 70.6013 | |
| astatham-gatk | INDEL | D1_5 | * | het | 99.6974 | 99.6803 | 99.7145 | 58.9760 | 87294 | 280 | 87301 | 250 | 122 | 48.8000 | |
| astatham-gatk | INDEL | D1_5 | * | hetalt | 97.2343 | 95.0220 | 99.5520 | 63.2355 | 9735 | 510 | 9778 | 44 | 43 | 97.7273 | |
| astatham-gatk | INDEL | D1_5 | * | homalt | 99.8143 | 99.9448 | 99.6841 | 62.4034 | 48899 | 27 | 48904 | 155 | 152 | 98.0645 | |
| astatham-gatk | INDEL | D6_15 | * | * | 98.2985 | 98.0875 | 98.5103 | 54.9898 | 25593 | 499 | 25592 | 387 | 347 | 89.6641 | |
| astatham-gatk | INDEL | D6_15 | * | het | 98.7915 | 99.4048 | 98.1857 | 62.8008 | 11523 | 69 | 11473 | 212 | 175 | 82.5472 | |
| astatham-gatk | INDEL | D6_15 | * | hetalt | 97.1014 | 94.8251 | 99.4898 | 33.5762 | 7751 | 423 | 7800 | 40 | 39 | 97.5000 | |
| astatham-gatk | INDEL | D6_15 | * | homalt | 98.8889 | 99.8893 | 97.9083 | 55.4989 | 6319 | 7 | 6319 | 135 | 133 | 98.5185 | |
| astatham-gatk | INDEL | I16_PLUS | * | * | 97.4870 | 96.7226 | 98.2635 | 70.9237 | 6168 | 209 | 6168 | 109 | 84 | 77.0642 | |
| astatham-gatk | INDEL | I16_PLUS | * | het | 98.4446 | 98.1604 | 98.7304 | 75.7581 | 2668 | 50 | 2644 | 34 | 11 | 32.3529 | |
| astatham-gatk | INDEL | I16_PLUS | * | hetalt | 96.0726 | 92.6597 | 99.7466 | 58.1637 | 1944 | 154 | 1968 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | * | homalt | 97.6467 | 99.6797 | 95.6950 | 72.0858 | 1556 | 5 | 1556 | 70 | 68 | 97.1429 | |
| astatham-gatk | INDEL | I1_5 | * | * | 99.4616 | 99.2520 | 99.6722 | 58.6147 | 149537 | 1127 | 149586 | 492 | 402 | 81.7073 | |
| astatham-gatk | INDEL | I1_5 | * | het | 99.5857 | 99.4610 | 99.7107 | 60.4880 | 78615 | 426 | 78596 | 228 | 141 | 61.8421 | |
| astatham-gatk | INDEL | I1_5 | * | hetalt | 97.1674 | 94.5243 | 99.9624 | 62.1019 | 10582 | 613 | 10645 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | * | homalt | 99.7125 | 99.8544 | 99.5710 | 55.1217 | 60340 | 88 | 60345 | 260 | 257 | 98.8462 | |
| astatham-gatk | INDEL | I6_15 | * | * | 97.8089 | 97.1035 | 98.5247 | 52.8353 | 24104 | 719 | 24109 | 361 | 337 | 93.3518 | |
| astatham-gatk | INDEL | I6_15 | * | het | 98.9793 | 98.7242 | 99.2358 | 59.2368 | 9905 | 128 | 9869 | 76 | 54 | 71.0526 | |
| astatham-gatk | INDEL | I6_15 | * | hetalt | 96.4480 | 93.1938 | 99.9376 | 38.5683 | 7969 | 582 | 8010 | 5 | 5 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | * | homalt | 97.7332 | 99.8557 | 95.6989 | 54.9107 | 6230 | 9 | 6230 | 280 | 278 | 99.2857 | |
| astatham-gatk | SNP | * | * | * | 99.5934 | 99.2091 | 99.9807 | 19.0428 | 3030461 | 24158 | 3030315 | 584 | 162 | 27.7397 | |
| astatham-gatk | SNP | * | * | het | 99.3521 | 98.7393 | 99.9725 | 20.1637 | 1849967 | 23620 | 1849845 | 508 | 95 | 18.7008 | |
| astatham-gatk | SNP | * | * | hetalt | 99.7699 | 99.5408 | 100.0000 | 40.6164 | 867 | 4 | 867 | 0 | 0 | ||
| astatham-gatk | SNP | * | * | homalt | 99.9742 | 99.9548 | 99.9936 | 17.1971 | 1179627 | 534 | 1179603 | 76 | 67 | 88.1579 | |
| astatham-gatk | SNP | ti | * | * | 99.6161 | 99.2515 | 99.9833 | 17.5605 | 2069900 | 15611 | 2069836 | 345 | 101 | 29.2754 | |
| astatham-gatk | SNP | ti | * | het | 99.3889 | 98.8086 | 99.9762 | 18.5890 | 1266618 | 15273 | 1266563 | 302 | 60 | 19.8675 | |
| astatham-gatk | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 39.9586 | 580 | 2 | 580 | 0 | 0 | ||
| astatham-gatk | SNP | ti | * | homalt | 99.9764 | 99.9582 | 99.9946 | 15.8604 | 802702 | 336 | 802693 | 43 | 41 | 95.3488 | |