PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9751-9800 / 86044 show all
gduggal-snapvardSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.7991
95.5378
98.0941
72.6859
16707816473212
37.5000
gduggal-snapplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
87.6253
90.1478
85.2402
88.4281
2928320292850725
4.9310
gduggal-snapplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
83.5589
88.9822
78.7587
90.6848
1801223180248614
2.8807
gduggal-snapplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
gduggal-snapplatSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.0245
92.0752
98.1691
77.4877
11279711262111
52.3810
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
23.2024
14.2344
62.7119
73.6999
119717111669
13.6364
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
21.3305
14.5749
39.7590
79.5062
3621133500
0.0000
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
24.8195
14.3396
92.2078
60.3093
764547165
83.3333
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
18.4211
11.8644
41.1765
77.0270
7527104
40.0000
gduggal-snapplatSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
84.5678
88.4131
81.0431
88.8392
4212552421198536
3.6548
gduggal-snapplatSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
79.6423
87.1021
73.3594
90.7618
2627389262795423
2.4109
gduggal-snapplatSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
gduggal-snapplatSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
94.2325
90.6751
98.0805
79.1908
158516315843113
41.9355
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
38.5774
33.9720
44.6273
63.2598
34226651539566944337
64.7894
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
48.6618
55.8168
43.1327
62.9167
22551785505366624317
64.8004
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
21.8358
0.0000
0.0000
8352989000
gduggal-snapvardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
25.8158
15.0294
91.4439
71.5156
33218773423220
62.5000
gduggal-snapvardINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
20.0000
90.7407
00141
25.0000
gduggal-snapvardINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
20.0000
89.7959
00141
25.0000
gduggal-snapvardINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapplatSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
78.3315
84.6966
72.8563
89.5793
1284232128347811
2.3013
gduggal-snapplatSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
72.2480
83.2661
63.8051
90.8950
8261668254689
1.9231
gduggal-snapplatSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
gduggal-snapplatSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
92.3387
87.4046
97.8632
82.4456
45866458102
20.0000
gduggal-snapplatINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
0.0000
0206000
gduggal-snapplatINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
095000
gduggal-snapplatINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
086000
gduggal-snapplatINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
025000
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
29.9351
28.5016
31.5205
88.2158
5251317539117152
4.4407
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
23.7011
34.8943
17.9449
88.9091
231431241110210
0.9074
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
30.4360
18.8406
79.1469
74.6699
1697281674435
79.5455
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
57.8898
44.1696
83.9744
90.0574
125158131257
28.0000
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
34.3818
27.5134
45.8204
41.0718
10812848118414001153
82.3571
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
48.9137
52.6535
45.6699
40.6819
506455117613991152
82.3445
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
23.3728
0.0000
0.0000
5531813000
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
7.0203
3.6545
88.8889
79.5455
22580811
100.0000
gduggal-snapvardINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
17.3913
86.6667
00167611
14.4737
gduggal-snapvardINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
0.0000
0.0000
16.6667
86.1751
00157511
14.6667
gduggal-snapvardINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELC6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
50.0000
94.8718
00110
0.0000
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
3.5385
1.9267
21.6495
84.1374
4120874215295
62.5000
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
7.2121
4.3609
20.8333
84.0266
296364015295
62.5000
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
1.0256
0.0000
0.0000
10965000
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.8163
0.4098
100.0000
90.4762
2486200
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
45.6100
45.3313
45.8922
57.7778
18062178286033722355
69.8399
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
55.6896
75.0355
44.2746
57.4199
1058352266433532340
69.7882
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
31.2294
0.0000
0.0000
5691253000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
37.7497
23.8032
91.1628
65.8188
1795731961915
78.9474