PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9751-9800 / 86044 show all | |||||||||||||||
gduggal-snapvard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.7991 | 95.5378 | 98.0941 | 72.6859 | 1670 | 78 | 1647 | 32 | 12 | 37.5000 | |
gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.6253 | 90.1478 | 85.2402 | 88.4281 | 2928 | 320 | 2928 | 507 | 25 | 4.9310 | |
gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.5589 | 88.9822 | 78.7587 | 90.6848 | 1801 | 223 | 1802 | 486 | 14 | 2.8807 | |
gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0245 | 92.0752 | 98.1691 | 77.4877 | 1127 | 97 | 1126 | 21 | 11 | 52.3810 | |
gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 23.2024 | 14.2344 | 62.7119 | 73.6999 | 119 | 717 | 111 | 66 | 9 | 13.6364 | |
gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 21.3305 | 14.5749 | 39.7590 | 79.5062 | 36 | 211 | 33 | 50 | 0 | 0.0000 | |
gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 24.8195 | 14.3396 | 92.2078 | 60.3093 | 76 | 454 | 71 | 6 | 5 | 83.3333 | |
gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 18.4211 | 11.8644 | 41.1765 | 77.0270 | 7 | 52 | 7 | 10 | 4 | 40.0000 | |
gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 84.5678 | 88.4131 | 81.0431 | 88.8392 | 4212 | 552 | 4211 | 985 | 36 | 3.6548 | |
gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.6423 | 87.1021 | 73.3594 | 90.7618 | 2627 | 389 | 2627 | 954 | 23 | 2.4109 | |
gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2325 | 90.6751 | 98.0805 | 79.1908 | 1585 | 163 | 1584 | 31 | 13 | 41.9355 | |
gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.5774 | 33.9720 | 44.6273 | 63.2598 | 3422 | 6651 | 5395 | 6694 | 4337 | 64.7894 | |
gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 48.6618 | 55.8168 | 43.1327 | 62.9167 | 2255 | 1785 | 5053 | 6662 | 4317 | 64.8004 | |
gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 21.8358 | 0.0000 | 0.0000 | 835 | 2989 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 25.8158 | 15.0294 | 91.4439 | 71.5156 | 332 | 1877 | 342 | 32 | 20 | 62.5000 | |
gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 90.7407 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 89.7959 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 78.3315 | 84.6966 | 72.8563 | 89.5793 | 1284 | 232 | 1283 | 478 | 11 | 2.3013 | |
gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 72.2480 | 83.2661 | 63.8051 | 90.8950 | 826 | 166 | 825 | 468 | 9 | 1.9231 | |
gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.3387 | 87.4046 | 97.8632 | 82.4456 | 458 | 66 | 458 | 10 | 2 | 20.0000 | |
gduggal-snapplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 206 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 95 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 86 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 25 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 29.9351 | 28.5016 | 31.5205 | 88.2158 | 525 | 1317 | 539 | 1171 | 52 | 4.4407 | |
gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 23.7011 | 34.8943 | 17.9449 | 88.9091 | 231 | 431 | 241 | 1102 | 10 | 0.9074 | |
gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 30.4360 | 18.8406 | 79.1469 | 74.6699 | 169 | 728 | 167 | 44 | 35 | 79.5455 | |
gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 57.8898 | 44.1696 | 83.9744 | 90.0574 | 125 | 158 | 131 | 25 | 7 | 28.0000 | |
gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 34.3818 | 27.5134 | 45.8204 | 41.0718 | 1081 | 2848 | 1184 | 1400 | 1153 | 82.3571 | |
gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 48.9137 | 52.6535 | 45.6699 | 40.6819 | 506 | 455 | 1176 | 1399 | 1152 | 82.3445 | |
gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 23.3728 | 0.0000 | 0.0000 | 553 | 1813 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 7.0203 | 3.6545 | 88.8889 | 79.5455 | 22 | 580 | 8 | 1 | 1 | 100.0000 | |
gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 17.3913 | 86.6667 | 0 | 0 | 16 | 76 | 11 | 14.4737 | |
gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 86.1751 | 0 | 0 | 15 | 75 | 11 | 14.6667 | |
gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.8718 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 3.5385 | 1.9267 | 21.6495 | 84.1374 | 41 | 2087 | 42 | 152 | 95 | 62.5000 | |
gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 7.2121 | 4.3609 | 20.8333 | 84.0266 | 29 | 636 | 40 | 152 | 95 | 62.5000 | |
gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.0256 | 0.0000 | 0.0000 | 10 | 965 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.8163 | 0.4098 | 100.0000 | 90.4762 | 2 | 486 | 2 | 0 | 0 | ||
gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 45.6100 | 45.3313 | 45.8922 | 57.7778 | 1806 | 2178 | 2860 | 3372 | 2355 | 69.8399 | |
gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.6896 | 75.0355 | 44.2746 | 57.4199 | 1058 | 352 | 2664 | 3353 | 2340 | 69.7882 | |
gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 31.2294 | 0.0000 | 0.0000 | 569 | 1253 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 37.7497 | 23.8032 | 91.1628 | 65.8188 | 179 | 573 | 196 | 19 | 15 | 78.9474 |