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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 191 192 193 194 195 196 197 198 199 ... 1720 1721 » 9701-9750 / 86044 show all
ckim-isaac	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-isaac	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.5412	91.9336	99.4434	50.8361	1607	141	1608	9	7	77.7778
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.7235	93.8350	95.6289	69.0222	9452	621	9298	425	390	91.7647
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	95.3979	96.6584	94.1699	79.6348	3905	135	3602	223	191	85.6502
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.2704	87.7615	99.5173	36.9269	3356	468	3505	17	17	100.0000
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.5725	99.1852	92.2138	66.1587	2191	18	2191	185	182	98.3784
ckim-vqsr	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.2766	92.2164	96.4310	62.9827	1398	118	1405	52	20	38.4615
ckim-isaac	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.9529	91.4315	96.6173	65.9835	907	85	914	32	1	3.1250
ckim-isaac	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-isaac	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.5585	93.7023	99.5943	53.9683	491	33	491	2	1	50.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	66.2956	51.4563	93.1624	81.5748	106	100	109	8	4	50.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	65.3856	51.5789	89.2857	85.3018	49	46	50	6	2	33.3333
ckim-isaac	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	64.6154	48.8372	95.4545	66.4122	42	44	42	2	2	100.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	75.0000	60.0000	100.0000	86.1789	15	10	17	0	0
ckim-isaac	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	80.9438	72.3670	91.8269	61.8148	1333	509	1337	119	66	55.4622
ckim-isaac	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	85.1218	85.4985	84.7484	72.4437	566	96	539	97	47	48.4536
ghariani-varprowl	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	43.5285	42.1324	45.0202	75.7921	4244	5829	4231	5167	5021	97.1744
ghariani-varprowl	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	56.3707	87.9455	41.4787	65.8135	3553	487	3568	5034	4915	97.6361
ghariani-varprowl	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	0.6538	0.0000	0.0000	25	3799	0	0	0
ghariani-varprowl	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	44.2731	30.1494	83.2915	76.5745	666	1543	663	133	106	79.6992
gduggal-snapvard	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	82.5113	95.2894	72.7551	82.9109	3095	153	3095	1159	30	2.5884
gduggal-snapvard	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	75.9223	95.2075	63.1339	85.1688	1927	97	1942	1134	22	1.9400
gduggal-snapvard	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.6357	95.4248	97.8778	71.6350	1168	56	1153	25	8	32.0000
gduggal-snapvard	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	81.8084	94.5910	72.0693	83.9601	1434	82	1414	548	14	2.5547
gduggal-snapvard	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	75.3664	93.9516	62.9198	85.7017	932	60	918	541	10	1.8484
gduggal-snapvard	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.1847	95.8015	98.6083	75.1972	502	22	496	7	4	57.1429
ghariani-varprowl	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	35.8287	33.0357	39.1376	73.2950	703	1425	708	1101	1085	98.5468
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	50.2132	87.3684	35.2307	72.3584	581	84	588	1081	1065	98.5199
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	0.2051	0.0000	0.0000	2	973	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	38.2166	24.5902	85.7143	80.9783	120	368	120	20	20	100.0000
ghariani-varprowl	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	82.6781	95.0672	73.1457	83.0764	4529	235	4497	1651	43	2.6045
gduggal-snapvard	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	76.2490	94.7944	63.7727	85.1927	2859	157	2850	1619	31	1.9148

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