PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9601-9650 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 87.7109 | 81.5789 | 94.8396 | 65.2279 | 682 | 154 | 680 | 37 | 31 | 83.7838 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.9659 | 85.8300 | 94.5205 | 76.9716 | 212 | 35 | 207 | 12 | 8 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 87.1538 | 78.6792 | 97.6744 | 47.9419 | 417 | 113 | 420 | 10 | 9 | 90.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.4646 | 89.8305 | 77.9412 | 76.1404 | 53 | 6 | 53 | 15 | 14 | 93.3333 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.5362 | 98.1948 | 98.8800 | 67.3655 | 4678 | 86 | 4679 | 53 | 21 | 39.6226 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.2365 | 97.8780 | 98.5977 | 69.1078 | 2952 | 64 | 2953 | 42 | 11 | 26.1905 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0531 | 98.7414 | 99.3667 | 63.7370 | 1726 | 22 | 1726 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 52.8397 | 49.0718 | 57.2344 | 61.3327 | 4943 | 5130 | 5716 | 4271 | 3848 | 90.0960 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.9522 | 65.2228 | 85.3794 | 65.4520 | 2635 | 1405 | 2914 | 499 | 370 | 74.1483 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 20.1854 | 11.4278 | 86.3881 | 77.1411 | 437 | 3387 | 641 | 101 | 85 | 84.1584 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 51.5543 | 84.6990 | 37.0542 | 41.5748 | 1871 | 338 | 2161 | 3671 | 3393 | 92.4271 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 94.1349 | 0 | 0 | 8 | 12 | 8 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.5915 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.1748 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 38.4615 | 92.2156 | 0 | 0 | 5 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 93.0830 | 0 | 0 | 28 | 42 | 14 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 93.9227 | 0 | 0 | 12 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 10 | 10 | 7 | 70.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 21.4286 | 90.0000 | 0 | 0 | 6 | 22 | 5 | 22.7273 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.2141 | 97.8892 | 98.5411 | 67.8190 | 1484 | 32 | 1486 | 22 | 10 | 45.4545 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9773 | 97.5806 | 98.3773 | 68.8271 | 968 | 24 | 970 | 16 | 5 | 31.2500 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.6616 | 98.4733 | 98.8506 | 65.3846 | 516 | 8 | 516 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0142 | 90.8795 | 95.2517 | 63.6364 | 1674 | 168 | 1665 | 83 | 41 | 49.3976 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1492 | 94.4109 | 91.9207 | 73.5164 | 625 | 37 | 603 | 53 | 16 | 30.1887 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5832 | 87.5139 | 98.2759 | 42.2886 | 785 | 112 | 798 | 14 | 12 | 85.7143 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.7833 | 93.2862 | 94.2857 | 69.6641 | 264 | 19 | 264 | 16 | 13 | 81.2500 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 41.7793 | 36.0397 | 49.6933 | 42.7847 | 1416 | 2513 | 1458 | 1476 | 1368 | 92.6829 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 73.7801 | 62.4350 | 90.1639 | 54.2729 | 600 | 361 | 550 | 60 | 48 | 80.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 18.7138 | 10.4396 | 90.2235 | 66.4165 | 247 | 2119 | 323 | 35 | 30 | 85.7143 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 45.2624 | 94.5183 | 29.7558 | 27.9326 | 569 | 33 | 585 | 1381 | 1290 | 93.4106 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 33.7995 | 27.2556 | 44.4783 | 55.2641 | 580 | 1548 | 584 | 729 | 693 | 95.0617 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 46.1659 | 40.4511 | 53.7611 | 64.5212 | 269 | 396 | 243 | 209 | 202 | 96.6507 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 9.8376 | 5.2308 | 82.4742 | 81.6635 | 51 | 924 | 80 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 41.6309 | 53.2787 | 34.1623 | 32.5088 | 260 | 228 | 261 | 503 | 475 | 94.4334 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 58.3043 | 52.2088 | 66.0112 | 56.8516 | 2080 | 1904 | 2249 | 1158 | 1030 | 88.9465 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 84.1308 | 76.7376 | 93.1005 | 65.8125 | 1082 | 328 | 1093 | 81 | 21 | 25.9259 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 24.4790 | 14.1603 | 90.2314 | 68.8301 | 258 | 1564 | 351 | 38 | 31 | 81.5789 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.4796 | 98.4043 | 43.6551 | 42.6260 | 740 | 12 | 805 | 1039 | 978 | 94.1290 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 59.1529 | 51.0315 | 70.3486 | 60.3619 | 940 | 902 | 1433 | 604 | 512 | 84.7682 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 85.8715 | 81.4199 | 90.8380 | 65.8788 | 539 | 123 | 813 | 82 | 43 | 52.4390 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 27.1199 | 15.9420 | 90.7489 | 71.4824 | 143 | 754 | 206 | 21 | 19 | 90.4762 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.4770 | 91.1661 | 45.2459 | 46.8023 | 258 | 25 | 414 | 501 | 450 | 89.8204 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.3227 | 27.8708 | 61.3176 | 55.5889 | 233 | 603 | 363 | 229 | 214 | 93.4498 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 65.1949 | 54.6559 | 80.7692 | 61.1940 | 135 | 112 | 189 | 45 | 43 | 95.5556 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.2616 | 10.7547 | 92.1569 | 64.7059 | 57 | 473 | 94 | 8 | 7 | 87.5000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.1125 | 69.4915 | 31.2500 | 41.9501 | 41 | 18 | 80 | 176 | 164 | 93.1818 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 11.8946 | 6.7961 | 47.6190 | 65.8537 | 14 | 192 | 20 | 22 | 20 | 90.9091 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 17.9104 | 10.5263 | 60.0000 | 67.7419 | 10 | 85 | 12 | 8 | 8 | 100.0000 | |