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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 188 189 190 191 192 193 194 195 196 ... 1720 1721 » 9551-9600 / 86044 show all
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.2201	83.9465	99.8737	37.5887	753	144	791	1	1	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.8621	98.2332	93.6027	69.8477	278	5	278	19	19	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.6130	91.3876	98.0745	66.7520	764	72	764	15	13	86.6667
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	96.6346	95.5466	97.7477	80.8621	236	11	217	5	3	60.0000
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.8037	88.4906	99.7955	45.1178	469	61	488	1	1	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	92.9134	100.0000	86.7647	76.7123	59	0	59	9	9	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.9394	90.2913	97.8947	88.4988	186	20	186	4	2	50.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.8838	90.5263	97.5000	91.3886	86	9	78	2	0	0.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.1677	87.2093	100.0000	76.4205	75	11	83	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.1538	100.0000	92.5926	92.7224	25	0	25	2	2	100.0000
ckim-vqsr	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1194	98.7685	99.4729	66.0097	3208	40	3208	17	8	47.0588
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.9599	98.7154	99.2056	68.9820	1998	26	1998	16	7	43.7500
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.3840	98.8562	99.9174	59.5119	1210	14	1210	1	1	100.0000
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1719	98.7467	99.6008	69.5995	1497	19	1497	6	2	33.3333
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.8343	98.2863	99.3884	71.8022	975	17	975	6	2	33.3333
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	64.2221	522	2	522	0	0
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.9925	94.4604	95.5306	69.2327	9515	558	9362	438	390	89.0411
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	95.4266	96.8812	94.0151	79.6225	3914	126	3613	230	189	82.1739
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.0819	89.2259	99.4969	40.1872	3412	412	3560	18	17	94.4444
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.4228	99.0946	92.0135	66.0676	2189	20	2189	190	184	96.8421
dgrover-gatk	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	95.6094	95.5357	95.6831	73.2283	2033	95	2017	91	76	83.5165
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.2637	97.8947	89.0511	87.2350	651	14	488	60	49	81.6667
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	95.4946	92.1026	99.1461	40.7199	898	77	1045	9	9	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.3843	99.1803	95.6522	71.9357	484	4	484	22	18	81.8182
dgrover-gatk	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.1361	98.7615	99.5135	67.2304	4705	59	4705	23	10	43.4783
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.9186	98.5743	99.2654	69.9659	2973	43	2973	22	9	40.9091
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.5116	99.0847	99.9423	61.0562	1732	16	1732	1	1	100.0000
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.6867	98.3374	99.0385	67.1791	3194	54	3193	31	11	35.4839
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.3636	98.0237	98.7058	69.2437	1984	40	1983	26	6	23.0769
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.2210	98.8562	99.5885	62.9799	1210	14	1210	5	5	100.0000

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