PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9351-9400 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8514 | 86.7287 | 99.9044 | 30.7514 | 2052 | 314 | 2090 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.9803 | 97.1761 | 94.8136 | 51.0706 | 585 | 17 | 585 | 32 | 31 | 96.8750 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2356 | 91.2621 | 97.4093 | 87.4594 | 188 | 18 | 188 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.4891 | 91.5789 | 97.5904 | 89.8284 | 87 | 8 | 81 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.8272 | 88.3721 | 100.0000 | 78.3641 | 76 | 10 | 82 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 91.8605 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.6531 | 97.6280 | 99.6999 | 67.5388 | 4651 | 113 | 4651 | 14 | 1 | 7.1429 | |
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.0815 | 96.6180 | 99.5899 | 68.7793 | 2914 | 102 | 2914 | 12 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6272 | 99.3707 | 99.8850 | 65.1363 | 1737 | 11 | 1737 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.8359 | 98.0296 | 99.6557 | 67.1059 | 3184 | 64 | 3184 | 11 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.3762 | 97.2826 | 99.4947 | 68.4722 | 1969 | 55 | 1969 | 10 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5902 | 99.2647 | 99.9178 | 64.5481 | 1215 | 9 | 1215 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9204 | 87.9187 | 98.5255 | 66.5471 | 735 | 101 | 735 | 11 | 9 | 81.8182 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1339 | 92.7126 | 97.6852 | 79.5455 | 229 | 18 | 211 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7263 | 84.7170 | 100.0000 | 48.5116 | 449 | 81 | 467 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.4426 | 96.6102 | 90.4762 | 76.4045 | 57 | 2 | 57 | 6 | 6 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4481 | 90.3112 | 98.9821 | 58.9266 | 3598 | 386 | 3598 | 37 | 30 | 81.0811 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4016 | 92.2695 | 98.7539 | 72.0200 | 1301 | 109 | 1268 | 16 | 9 | 56.2500 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.4122 | 85.8946 | 100.0000 | 32.3455 | 1565 | 257 | 1598 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.2757 | 97.3404 | 97.2112 | 60.3476 | 732 | 20 | 732 | 21 | 21 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.0957 | 93.3062 | 96.9553 | 51.5459 | 3666 | 263 | 3662 | 115 | 107 | 93.0435 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3143 | 94.5890 | 94.0412 | 72.3901 | 909 | 52 | 868 | 55 | 49 | 89.0909 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2234 | 91.3356 | 99.4570 | 29.5056 | 2161 | 205 | 2198 | 12 | 11 | 91.6667 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6661 | 99.0033 | 92.5466 | 51.1010 | 596 | 6 | 596 | 48 | 47 | 97.9167 | |
| jli-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6451 | 94.1259 | 97.2141 | 69.2007 | 2003 | 125 | 1989 | 57 | 51 | 89.4737 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3549 | 93.6842 | 93.0279 | 84.8155 | 623 | 42 | 467 | 35 | 31 | 88.5714 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.7582 | 92.5128 | 99.2395 | 38.0448 | 902 | 73 | 1044 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.5510 | 97.9508 | 97.1545 | 69.9817 | 478 | 10 | 478 | 14 | 12 | 85.7143 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.1711 | 94.2520 | 98.1699 | 58.1784 | 3755 | 229 | 3755 | 70 | 62 | 88.5714 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7437 | 95.5319 | 97.9866 | 71.7029 | 1347 | 63 | 1314 | 27 | 20 | 74.0741 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2565 | 91.3831 | 99.4728 | 30.2126 | 1665 | 157 | 1698 | 9 | 8 | 88.8889 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1877 | 98.8032 | 95.6242 | 60.3774 | 743 | 9 | 743 | 34 | 34 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.8328 | 92.0195 | 97.8236 | 63.3039 | 1695 | 147 | 1708 | 38 | 31 | 81.5789 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8948 | 95.1662 | 96.6346 | 75.0898 | 630 | 32 | 603 | 21 | 15 | 71.4286 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.4149 | 87.7369 | 99.8786 | 37.6230 | 787 | 110 | 823 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3984 | 98.2332 | 94.6309 | 68.0258 | 278 | 5 | 282 | 16 | 15 | 93.7500 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4403 | 91.3876 | 97.7041 | 63.8876 | 764 | 72 | 766 | 18 | 15 | 83.3333 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1490 | 92.7126 | 97.7169 | 78.3168 | 229 | 18 | 214 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5415 | 89.8113 | 99.7976 | 44.9275 | 476 | 54 | 493 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.7692 | 100.0000 | 83.0986 | 73.1061 | 59 | 0 | 59 | 12 | 12 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7526 | 86.4078 | 97.8022 | 85.8034 | 178 | 28 | 178 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.6554 | 86.3158 | 100.0000 | 88.5321 | 82 | 13 | 75 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.8239 | 84.8837 | 100.0000 | 75.5352 | 73 | 13 | 80 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4615 | 92.0000 | 85.1852 | 91.0299 | 23 | 2 | 23 | 4 | 1 | 25.0000 | |