PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9001-9050 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.2279 | 23.2884 | 30.0166 | 55.4521 | 915 | 3014 | 905 | 2110 | 2058 | 97.5355 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 43.5112 | 89.2820 | 28.7648 | 54.7750 | 858 | 103 | 850 | 2105 | 2053 | 97.5297 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0423 | 0.0000 | 0.0000 | 1 | 2365 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 16.8906 | 9.3023 | 91.6667 | 74.3590 | 56 | 546 | 55 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 38.0404 | 35.5733 | 40.8751 | 72.9582 | 757 | 1371 | 766 | 1108 | 1004 | 90.6137 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.6103 | 86.3158 | 34.8083 | 73.4368 | 574 | 91 | 590 | 1105 | 1001 | 90.5882 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.1026 | 0.0000 | 0.0000 | 1 | 974 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 54.0780 | 37.2951 | 98.3240 | 67.3953 | 182 | 306 | 176 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 42.8527 | 36.9227 | 51.0519 | 66.2725 | 1471 | 2513 | 1456 | 1396 | 1253 | 89.7564 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 59.8779 | 85.1773 | 46.1658 | 67.0074 | 1201 | 209 | 1192 | 1390 | 1248 | 89.7842 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2195 | 0.0000 | 0.0000 | 4 | 1818 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 51.9508 | 35.3723 | 97.7778 | 57.1429 | 266 | 486 | 264 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 49.7630 | 39.5223 | 67.1670 | 73.6334 | 728 | 1114 | 716 | 350 | 286 | 81.7143 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 71.5090 | 85.4985 | 61.4537 | 75.3529 | 566 | 96 | 558 | 350 | 286 | 81.7143 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.3344 | 0.0000 | 0.0000 | 3 | 894 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 71.9457 | 56.1837 | 100.0000 | 55.9889 | 159 | 124 | 158 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 33.8099 | 25.0000 | 52.2078 | 71.4603 | 209 | 627 | 201 | 184 | 169 | 91.8478 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.9324 | 77.3279 | 50.2732 | 71.4953 | 191 | 56 | 184 | 182 | 167 | 91.7582 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.1887 | 0.0000 | 0.0000 | 1 | 529 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.5897 | 28.8136 | 89.4737 | 70.7692 | 17 | 42 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.3662 | 31.0680 | 41.0448 | 83.2080 | 64 | 142 | 55 | 79 | 42 | 53.1646 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.2114 | 63.1579 | 40.3101 | 83.2031 | 60 | 35 | 52 | 77 | 41 | 53.2468 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.1628 | 0.0000 | 0.0000 | 1 | 85 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 83.3333 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 45.4545 | 97.8218 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 45.4545 | 97.6744 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.7506 | 68.0178 | 96.3749 | 45.6511 | 2601 | 1223 | 1090 | 41 | 40 | 97.5610 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 82.5111 | 88.7732 | 77.0743 | 58.5831 | 1961 | 248 | 1960 | 583 | 573 | 98.2847 | |
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.9250 | 98.8608 | 89.4585 | 75.5441 | 3211 | 37 | 3106 | 366 | 29 | 7.9235 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4797 | 98.7648 | 86.9467 | 79.4810 | 1999 | 25 | 1925 | 289 | 9 | 3.1142 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4666 | 99.0196 | 94.0419 | 60.5213 | 1212 | 12 | 1168 | 74 | 18 | 24.3243 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.5507 | 98.2850 | 85.6800 | 74.8152 | 1490 | 26 | 1430 | 239 | 16 | 6.6946 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.9665 | 98.0847 | 81.3995 | 77.6081 | 973 | 19 | 919 | 210 | 7 | 3.3333 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.7431 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5573 | 98.6641 | 94.5386 | 64.0244 | 517 | 7 | 502 | 29 | 9 | 31.0345 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 81.8128 | 74.8933 | 90.1411 | 58.1664 | 7544 | 2529 | 8942 | 978 | 867 | 88.6503 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 82.8200 | 73.8119 | 94.3324 | 59.6824 | 2982 | 1058 | 5892 | 354 | 254 | 71.7514 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 73.6043 | 64.1917 | 86.2515 | 56.0661 | 1366 | 762 | 1468 | 234 | 231 | 98.7179 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 70.3339 | 57.7444 | 89.9436 | 58.0772 | 384 | 281 | 957 | 107 | 104 | 97.1963 | |