PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8851-8900 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0673 | 90.9611 | 99.5617 | 70.9107 | 1590 | 158 | 1590 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 42.4373 | 41.1000 | 43.8645 | 68.7909 | 4140 | 5933 | 4118 | 5270 | 4818 | 91.4231 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 54.1148 | 85.3960 | 39.6066 | 69.0608 | 3450 | 590 | 3443 | 5250 | 4800 | 91.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.1831 | 0.0000 | 0.0000 | 7 | 3817 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 46.9055 | 30.9190 | 97.1223 | 64.9698 | 683 | 1526 | 675 | 20 | 18 | 90.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 23.0769 | 97.4708 | 0 | 0 | 3 | 10 | 2 | 20.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 97.7827 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 95.2381 | 0 | 0 | 1 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 32.0000 | 94.1995 | 0 | 0 | 16 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.6122 | 94.1106 | 0 | 0 | 15 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 90.3792 | 84.8945 | 96.6216 | 83.4493 | 1287 | 229 | 1287 | 45 | 5 | 11.1111 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.7695 | 83.2661 | 95.0518 | 86.1448 | 826 | 166 | 826 | 43 | 4 | 9.3023 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.4144 | 87.9771 | 99.5680 | 73.7230 | 461 | 63 | 461 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 69.9678 | 56.0261 | 93.1470 | 80.3055 | 1032 | 810 | 1033 | 76 | 17 | 22.3684 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 69.7158 | 58.9124 | 85.3712 | 87.1924 | 390 | 272 | 391 | 67 | 8 | 11.9403 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.1082 | 50.8361 | 98.7013 | 60.3433 | 456 | 441 | 456 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 78.8136 | 65.7244 | 98.4127 | 78.7640 | 186 | 97 | 186 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.3609 | 86.1027 | 90.7407 | 70.8221 | 570 | 92 | 686 | 70 | 40 | 57.1429 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.2391 | 67.4470 | 96.0280 | 47.6132 | 605 | 292 | 411 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.7698 | 86.2191 | 89.3773 | 67.9201 | 244 | 39 | 244 | 29 | 29 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 65.0432 | 50.9569 | 89.8925 | 58.2960 | 426 | 410 | 418 | 47 | 47 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 67.1080 | 54.2510 | 87.9518 | 61.8098 | 134 | 113 | 219 | 30 | 30 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 63.0031 | 47.3585 | 94.0828 | 47.0219 | 251 | 279 | 159 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 76.5104 | 69.4915 | 85.1064 | 67.3611 | 41 | 18 | 40 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.6406 | 75.4390 | 91.3622 | 46.4432 | 2964 | 965 | 3226 | 305 | 294 | 96.3934 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 83.9148 | 73.4651 | 97.8302 | 47.7704 | 706 | 255 | 2074 | 46 | 36 | 78.2609 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 82.4503 | 70.7523 | 98.7826 | 36.8825 | 1674 | 692 | 568 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.2239 | 97.0100 | 69.8565 | 48.4904 | 584 | 18 | 584 | 252 | 251 | 99.6032 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 18.4100 | 10.6796 | 66.6667 | 69.1589 | 22 | 184 | 22 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 16.6887 | 9.4737 | 70.0000 | 64.9123 | 9 | 86 | 14 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.6078 | 11.6279 | 62.5000 | 75.7576 | 10 | 76 | 5 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 70.5882 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 83.8715 | 77.0358 | 92.0384 | 65.7901 | 1419 | 423 | 1341 | 116 | 85 | 73.2759 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6683 | 98.8300 | 92.7026 | 77.7557 | 3210 | 38 | 3214 | 253 | 21 | 8.3004 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.7638 | 98.6660 | 89.3256 | 80.9138 | 1997 | 27 | 2000 | 239 | 13 | 5.4393 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.9805 | 99.1013 | 98.8599 | 68.0375 | 1213 | 11 | 1214 | 14 | 8 | 57.1429 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6826 | 98.0211 | 91.5640 | 77.5938 | 1486 | 30 | 1487 | 137 | 13 | 9.4891 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4977 | 97.4798 | 88.0000 | 79.7980 | 967 | 25 | 968 | 132 | 9 | 6.8182 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0458 | 99.0458 | 99.0458 | 70.6113 | 519 | 5 | 519 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3543 | 98.5726 | 92.3394 | 77.6916 | 4696 | 68 | 4701 | 390 | 34 | 8.7180 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3470 | 98.2759 | 88.8889 | 80.5601 | 2964 | 52 | 2968 | 371 | 22 | 5.9299 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0000 | 99.0847 | 98.9155 | 68.8533 | 1732 | 16 | 1733 | 19 | 12 | 63.1579 | |