PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8801-8850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | HG002compoundhet | * | 79.6649 | 97.8931 | 67.1595 | 54.5136 | 8735 | 188 | 8812 | 4309 | 247 | 5.7322 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | het | 69.0686 | 96.5761 | 53.7572 | 56.2100 | 4513 | 160 | 4600 | 3957 | 124 | 3.1337 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | hetalt | 97.7828 | 99.7680 | 95.8751 | 27.4859 | 860 | 2 | 860 | 37 | 8 | 21.6216 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | homalt | 95.1607 | 99.2326 | 91.4099 | 54.5488 | 3362 | 26 | 3352 | 315 | 115 | 36.5079 | |
| gduggal-snapfb | INDEL | I1_5 | HG002compoundhet | * | 77.3920 | 77.8731 | 76.9169 | 63.1671 | 9622 | 2734 | 10473 | 3143 | 1735 | 55.2020 | |
| gduggal-snapfb | INDEL | I1_5 | HG002compoundhet | het | 76.4321 | 76.3529 | 76.5115 | 47.4370 | 649 | 201 | 6049 | 1857 | 595 | 32.0409 | |
| gduggal-snapfb | INDEL | I1_5 | HG002compoundhet | hetalt | 85.0180 | 77.5969 | 94.0087 | 72.7861 | 8673 | 2504 | 4111 | 262 | 204 | 77.8626 | |
| gduggal-snapfb | INDEL | I1_5 | HG002compoundhet | homalt | 37.2562 | 91.1854 | 23.4106 | 77.1726 | 300 | 29 | 313 | 1024 | 936 | 91.4062 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | * | 88.4972 | 90.4035 | 86.6696 | 48.3543 | 23344 | 2478 | 23445 | 3606 | 414 | 11.4809 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | het | 83.0864 | 88.0801 | 78.6286 | 53.0695 | 12488 | 1690 | 12671 | 3444 | 265 | 7.6945 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | HG002compoundhet | homalt | 95.7606 | 93.2573 | 98.4021 | 40.3893 | 10055 | 727 | 9976 | 162 | 149 | 91.9753 | |
| gduggal-bwavard | INDEL | * | HG002compoundhet | * | 14.6648 | 14.4226 | 14.9152 | 58.8895 | 4321 | 25639 | 4329 | 24695 | 23984 | 97.1209 | |
| gduggal-bwavard | INDEL | * | HG002compoundhet | het | 23.2106 | 89.3014 | 13.3387 | 58.9532 | 3656 | 438 | 3793 | 24643 | 23937 | 97.1351 | |
| gduggal-bwavard | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 0.3892 | 0.0000 | 0.0000 | 98 | 25082 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | HG002compoundhet | homalt | 86.6968 | 82.6531 | 91.1565 | 55.5556 | 567 | 119 | 536 | 52 | 47 | 90.3846 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 20.0000 | 87.7049 | 0 | 0 | 6 | 24 | 4 | 16.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 20.0000 | 87.0690 | 0 | 0 | 6 | 24 | 4 | 16.6667 | |
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | * | 84.8012 | 75.3988 | 96.8828 | 44.4562 | 6617 | 2159 | 6620 | 213 | 132 | 61.9718 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | het | 65.8766 | 65.8654 | 65.8879 | 86.4385 | 137 | 71 | 141 | 73 | 16 | 21.9178 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | hetalt | 85.9482 | 75.6238 | 99.5374 | 35.2988 | 6456 | 2081 | 6455 | 30 | 20 | 66.6667 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | homalt | 29.0909 | 77.4194 | 17.9104 | 80.8845 | 24 | 7 | 24 | 110 | 96 | 87.2727 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | * | 87.7776 | 87.6611 | 87.8944 | 56.9502 | 7822 | 1101 | 7856 | 1082 | 151 | 13.9556 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | het | 81.9141 | 84.1429 | 79.8002 | 62.7770 | 3932 | 741 | 3994 | 1011 | 84 | 8.3086 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | HG002compoundhet | homalt | 94.3411 | 91.1747 | 97.7352 | 50.1035 | 3089 | 299 | 3064 | 71 | 67 | 94.3662 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | * | 82.1492 | 71.0667 | 97.3270 | 74.9005 | 8781 | 3575 | 8775 | 241 | 126 | 52.2822 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | het | 69.2403 | 61.1765 | 79.7527 | 88.3612 | 520 | 330 | 516 | 131 | 31 | 23.6641 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | hetalt | 83.2751 | 71.4771 | 99.7378 | 70.8280 | 7989 | 3188 | 7987 | 21 | 17 | 80.9524 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | homalt | 78.8406 | 82.6748 | 75.3463 | 87.5988 | 272 | 57 | 272 | 89 | 78 | 87.6404 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 48.4848 | 84.1346 | 0 | 1 | 144 | 153 | 45 | 29.4118 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 46.8531 | 84.4057 | 0 | 0 | 134 | 152 | 44 | 28.9474 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 90.9091 | 71.0526 | 0 | 0 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | * | 89.0817 | 91.8641 | 86.4629 | 42.2720 | 16056 | 1422 | 16121 | 2524 | 263 | 10.4200 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | het | 83.6361 | 90.0158 | 78.1008 | 46.8217 | 8556 | 949 | 8677 | 2433 | 181 | 7.4394 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | hetalt | 95.9569 | 92.2280 | 100.0000 | 21.9941 | 534 | 45 | 532 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | HG002compoundhet | homalt | 96.4038 | 94.2115 | 98.7006 | 34.6979 | 6966 | 428 | 6912 | 91 | 82 | 90.1099 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2539 | 90.8867 | 97.8801 | 82.7110 | 2952 | 296 | 2955 | 64 | 9 | 14.0625 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3459 | 90.0692 | 96.8700 | 86.2669 | 1823 | 201 | 1826 | 59 | 4 | 6.7797 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7591 | 92.2386 | 99.5591 | 69.5815 | 1129 | 95 | 1129 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 64.8475 | 48.3254 | 98.5366 | 81.1754 | 404 | 432 | 404 | 6 | 3 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.1348 | 47.7733 | 97.5410 | 89.6698 | 118 | 129 | 119 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 63.8458 | 46.9811 | 99.5984 | 65.4167 | 249 | 281 | 248 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 75.5102 | 62.7119 | 94.8718 | 85.9206 | 37 | 22 | 37 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0429 | 88.9798 | 97.4948 | 82.9386 | 4239 | 525 | 4242 | 109 | 14 | 12.8440 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.8694 | 87.8316 | 96.2963 | 86.2286 | 2649 | 367 | 2652 | 102 | 8 | 7.8431 | |