PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8751-8800 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | HG002compoundhet | hetalt | 88.3144 | 80.5679 | 97.7090 | 73.4740 | 20287 | 4893 | 6696 | 157 | 155 | 98.7261 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | homalt | 33.7522 | 95.9184 | 20.4793 | 75.1027 | 658 | 28 | 658 | 2555 | 2524 | 98.7867 | |
| gduggal-bwafb | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 96.1538 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 97.9592 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | ti | HG002compoundhet | * | 97.7572 | 99.1589 | 96.3946 | 39.7398 | 17331 | 147 | 12860 | 481 | 101 | 20.9979 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | het | 95.2908 | 98.8427 | 91.9853 | 54.7039 | 9395 | 110 | 4017 | 350 | 50 | 14.2857 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | hetalt | 99.8980 | 99.8273 | 99.9687 | 18.5958 | 578 | 1 | 6398 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | homalt | 97.1981 | 99.5131 | 94.9883 | 44.4780 | 7358 | 36 | 2445 | 129 | 50 | 38.7597 | |
| gduggal-bwafb | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | * | HG002compoundhet | * | 97.2195 | 99.1054 | 95.4041 | 44.2893 | 25591 | 231 | 16939 | 816 | 176 | 21.5686 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | het | 94.4229 | 98.7586 | 90.4519 | 56.9085 | 14002 | 176 | 5845 | 617 | 93 | 15.0729 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | hetalt | 99.9219 | 99.8840 | 99.9599 | 21.9998 | 861 | 1 | 7478 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | homalt | 97.1233 | 99.4992 | 94.8583 | 47.6589 | 10728 | 54 | 3616 | 196 | 81 | 41.3265 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | * | 82.3584 | 75.6514 | 90.3704 | 28.6893 | 1771 | 570 | 1952 | 208 | 208 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | het | 83.1185 | 71.8519 | 98.5755 | 24.7427 | 291 | 114 | 1730 | 25 | 25 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | hetalt | 86.2756 | 76.4004 | 99.0826 | 35.1190 | 1473 | 455 | 216 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.1901 | 87.5000 | 3.2086 | 48.1994 | 7 | 1 | 6 | 181 | 181 | 100.0000 | |
| gduggal-bwafb | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | HG002compoundhet | * | 0.0000 | 0.0467 | 0.0000 | 0.0000 | 1 | 2142 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | HG002compoundhet | het | 0.0000 | 2.1277 | 0.0000 | 0.0000 | 1 | 46 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2093 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | ti | HG002compoundhet | * | 85.8670 | 98.1291 | 76.3290 | 43.9481 | 17151 | 327 | 17345 | 5379 | 340 | 6.3209 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | het | 78.4798 | 97.2856 | 65.7667 | 46.9249 | 9247 | 258 | 9427 | 4907 | 174 | 3.5460 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | hetalt | 97.8831 | 99.8273 | 96.0133 | 26.9417 | 578 | 1 | 578 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | homalt | 96.6035 | 99.0803 | 94.2476 | 38.7254 | 7326 | 68 | 7340 | 448 | 160 | 35.7143 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | * | 72.3856 | 63.3263 | 84.4695 | 30.0529 | 5719 | 3312 | 6592 | 1212 | 1198 | 98.8449 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | het | 60.7617 | 44.3925 | 96.2540 | 19.2156 | 380 | 476 | 5730 | 223 | 211 | 94.6188 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | hetalt | 76.8495 | 65.2926 | 93.3775 | 40.5512 | 5322 | 2829 | 846 | 60 | 59 | 98.3333 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | homalt | 3.3072 | 70.8333 | 1.6931 | 58.2597 | 17 | 7 | 16 | 929 | 928 | 99.8924 | |
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | * | 66.9443 | 57.2812 | 80.5291 | 25.2164 | 5027 | 3749 | 5844 | 1413 | 1393 | 98.5846 | |
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | het | 56.6000 | 41.8269 | 87.5070 | 19.0965 | 87 | 121 | 4686 | 669 | 652 | 97.4589 | |
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | hetalt | 70.7588 | 57.7252 | 91.3944 | 38.7805 | 4928 | 3609 | 1147 | 108 | 105 | 97.2222 | |
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | homalt | 3.2572 | 38.7097 | 1.7002 | 37.4879 | 12 | 19 | 11 | 636 | 636 | 100.0000 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | * | 83.3987 | 98.0094 | 72.5790 | 48.5976 | 25308 | 514 | 25579 | 9664 | 581 | 6.0120 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | het | 75.1230 | 97.0518 | 61.2774 | 50.8228 | 13760 | 418 | 14027 | 8864 | 298 | 3.3619 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | hetalt | 97.7828 | 99.7680 | 95.8751 | 27.4859 | 860 | 2 | 860 | 37 | 8 | 21.6216 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | homalt | 96.1466 | 99.1282 | 93.3392 | 44.8696 | 10688 | 94 | 10692 | 763 | 275 | 36.0419 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | * | 80.1461 | 78.4226 | 81.9472 | 64.9485 | 9595 | 2640 | 10454 | 2303 | 1568 | 68.0851 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | het | 82.9422 | 78.7616 | 87.5915 | 48.3471 | 1361 | 367 | 6939 | 983 | 315 | 32.0448 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | hetalt | 86.5070 | 78.1323 | 96.8926 | 76.7383 | 7982 | 2234 | 3274 | 105 | 84 | 80.0000 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | homalt | 27.7922 | 86.5979 | 16.5522 | 77.7097 | 252 | 39 | 241 | 1215 | 1169 | 96.2140 | |